PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
51501-51550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.0751 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | * | 95.9264 | 94.3182 | 97.5904 | 81.3901 | 249 | 15 | 243 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 92.9853 | 88.2353 | 98.2759 | 77.6062 | 60 | 8 | 57 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | * | 95.7031 | 93.8182 | 97.6654 | 81.3633 | 258 | 17 | 251 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 91.9372 | 86.3014 | 98.3607 | 77.2388 | 63 | 10 | 60 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | * | 97.5076 | 96.4637 | 98.5743 | 79.6096 | 491 | 18 | 484 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | hetalt | 96.3564 | 93.9394 | 98.9011 | 80.3456 | 93 | 6 | 90 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 90.7441 | 83.2569 | 99.7110 | 70.5030 | 363 | 73 | 345 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 85.6972 | 75.6757 | 98.7780 | 69.6726 | 504 | 162 | 485 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 81.2500 | 72.2222 | 92.8571 | 70.2128 | 13 | 5 | 13 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 71.4894 | 58.3333 | 92.3077 | 78.3333 | 14 | 10 | 12 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 85.7143 | 77.1429 | 96.4286 | 65.8537 | 27 | 8 | 27 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 87.3950 | 80.0000 | 96.2963 | 75.2294 | 28 | 7 | 26 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.8448 | 66.1017 | 97.6744 | 72.7848 | 39 | 20 | 42 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.0000 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 85.6972 | 75.6757 | 98.7780 | 69.6726 | 504 | 162 | 485 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.9932 | 85.7143 | 99.2647 | 63.0435 | 144 | 24 | 135 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 88.2579 | 79.4286 | 99.2958 | 64.2317 | 139 | 36 | 141 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 94.2258 | 91.1111 | 97.5610 | 75.0000 | 41 | 4 | 40 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 86.5672 | 78.3784 | 96.6667 | 70.5882 | 29 | 8 | 29 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.1176 | 100.0000 | 88.8889 | 65.3846 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6725 | 96.5079 | 98.8655 | 65.2198 | 608 | 22 | 610 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5327 | 97.1098 | 97.9592 | 67.3333 | 336 | 10 | 336 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1533 | 98.7528 | 99.5572 | 74.0073 | 1346 | 17 | 1349 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.0917 | 98.9651 | 99.2188 | 73.5537 | 765 | 8 | 762 | 6 | 1 | 16.6667 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3191 | 99.1623 | 99.4764 | 77.1586 | 947 | 8 | 950 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.2702 | 99.4536 | 99.0876 | 76.1116 | 546 | 3 | 543 | 5 | 1 | 20.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 92.4810 | 89.2361 | 95.9707 | 74.6988 | 257 | 31 | 262 | 11 | 1 | 9.0909 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.5059 | 95.7223 | 99.3573 | 64.9865 | 1544 | 69 | 1546 | 10 | 1 | 10.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2265 | 98.7673 | 99.6899 | 57.2281 | 641 | 8 | 643 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.3863 | 99.1243 | 99.6497 | 55.8050 | 566 | 5 | 569 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.1881 | 98.5569 | 99.8274 | 68.1681 | 1161 | 17 | 1157 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.6369 | 75.2427 | 99.3631 | 51.2422 | 155 | 51 | 156 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 86.0739 | 75.9777 | 99.2647 | 40.3509 | 136 | 43 | 135 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2313 | 98.7627 | 99.7044 | 62.6862 | 1357 | 17 | 1349 | 4 | 1 | 25.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9397 | 98.7667 | 99.1133 | 38.6843 | 11292 | 141 | 11289 | 101 | 1 | 0.9901 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9852 | 99.9852 | 99.9852 | 34.3808 | 6744 | 1 | 6744 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 87.1595 | 78.3217 | 98.2456 | 92.8750 | 112 | 31 | 112 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.1220 | 95.1220 | 95.1220 | 91.5638 | 39 | 2 | 39 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 30.8140 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 64.5833 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m1_e0 | hetalt | 96.2963 | 95.1220 | 97.5000 | 65.5172 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l100_m2_e1 | hetalt | 96.4706 | 95.3488 | 97.6190 | 68.1818 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | map_l250_m0_e0 | het | 96.7528 | 96.9456 | 96.5608 | 92.4896 | 1460 | 46 | 1460 | 52 | 1 | 1.9231 | |
| raldana-dualsentieon | SNP | * | map_siren | hetalt | 97.5000 | 96.2963 | 98.7342 | 67.0833 | 78 | 3 | 78 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | * | segdup | het | 99.4013 | 99.7344 | 99.0704 | 90.7424 | 17271 | 46 | 17265 | 162 | 1 | 0.6173 | |
| raldana-dualsentieon | SNP | ti | * | hetalt | 99.7420 | 99.6564 | 99.8279 | 37.7278 | 580 | 2 | 580 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.3213 | 98.8739 | 99.7727 | 84.2237 | 439 | 5 | 439 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.6078 | 99.4778 | 99.7382 | 83.1048 | 381 | 2 | 381 | 1 | 1 | 100.0000 | |