PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50751-50800 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 66.6667 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| jpowers-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 66.6667 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| jpowers-varprowl | INDEL | I16_PLUS | map_siren | homalt | 37.0370 | 23.8095 | 83.3333 | 89.6552 | 5 | 16 | 5 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | func_cds | homalt | 97.4359 | 95.7983 | 99.1304 | 27.2152 | 114 | 5 | 114 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 5.5046 | 2.9126 | 50.0000 | 97.1429 | 6 | 200 | 1 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 92.3077 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 69.9301 | 58.8235 | 86.2069 | 92.6952 | 30 | 21 | 25 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.1429 | 4.0000 | 33.3333 | 86.3636 | 1 | 24 | 1 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| jpowers-varprowl | INDEL | I1_5 | map_l125_m0_e0 | homalt | 97.3214 | 95.6140 | 99.0909 | 79.4007 | 109 | 5 | 109 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l150_m0_e0 | homalt | 96.9697 | 95.5224 | 98.4615 | 84.3373 | 64 | 3 | 64 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 98.0998 | 22 | 2 | 22 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m0_e0 | het | 90.3226 | 93.3333 | 87.5000 | 98.4848 | 14 | 1 | 14 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.1176 | 90.9091 | 97.5610 | 91.9450 | 40 | 4 | 40 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.2529 | 91.1111 | 97.6190 | 93.2039 | 41 | 4 | 41 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.2390 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 80.3922 | 9 | 3 | 9 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 78.0702 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e0 | homalt | 82.7586 | 72.7273 | 96.0000 | 80.4688 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l100_m2_e1 | homalt | 82.7586 | 72.7273 | 96.0000 | 80.6202 | 24 | 9 | 24 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m0_e0 | homalt | 72.7273 | 66.6667 | 80.0000 | 85.7143 | 4 | 2 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m1_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 82.0896 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e0 | homalt | 81.4815 | 73.3333 | 91.6667 | 84.8101 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l125_m2_e1 | homalt | 81.4815 | 73.3333 | 91.6667 | 85.1852 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | map_l150_m2_e1 | homalt | 61.5385 | 50.0000 | 80.0000 | 91.8033 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | INDEL | I6_15 | segdup | homalt | 84.2758 | 74.4681 | 97.0588 | 89.7281 | 35 | 12 | 33 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4291 | 98.7026 | 98.1570 | 66.1366 | 3880 | 51 | 3888 | 73 | 1 | 1.3699 | |
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.3066 | 98.7971 | 97.8209 | 68.6304 | 2464 | 30 | 2469 | 55 | 1 | 1.8182 | |
| jpowers-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.7720 | 98.3536 | 99.1941 | 45.0969 | 4540 | 76 | 4554 | 37 | 1 | 2.7027 | |
| jpowers-varprowl | SNP | * | tech_badpromoters | het | 91.9255 | 96.1039 | 88.0952 | 62.9956 | 74 | 3 | 74 | 10 | 1 | 10.0000 | |
| jpowers-varprowl | SNP | * | tech_badpromoters | homalt | 98.7500 | 98.7500 | 98.7500 | 50.6173 | 79 | 1 | 79 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | * | 96.5116 | 97.6471 | 95.4023 | 51.1236 | 83 | 2 | 83 | 4 | 1 | 25.0000 | |
| jpowers-varprowl | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 43.2432 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| jpowers-varprowl | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.5345 | 96.5726 | 96.4965 | 79.8059 | 958 | 34 | 964 | 35 | 1 | 2.8571 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.2113 | 98.7743 | 97.6546 | 73.0305 | 1370 | 17 | 1374 | 33 | 1 | 3.0303 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.1120 | 99.2341 | 97.0149 | 76.5207 | 907 | 7 | 910 | 28 | 1 | 3.5714 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.2220 | 86.2903 | 86.1538 | 93.2079 | 107 | 17 | 112 | 18 | 1 | 5.5556 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3094 | 97.8017 | 98.8224 | 46.8984 | 2091 | 47 | 2098 | 25 | 1 | 4.0000 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | het | 88.8889 | 96.9697 | 82.0513 | 68.2927 | 32 | 1 | 32 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.5301 | 93.6306 | 97.5083 | 72.4674 | 1176 | 80 | 1174 | 30 | 1 | 3.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.0144 | 87.4251 | 99.3671 | 72.7116 | 146 | 21 | 157 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 96.5568 | 93.9394 | 99.3243 | 87.0289 | 124 | 8 | 147 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 88.4082 | 79.8387 | 99.0385 | 99.9179 | 99 | 25 | 103 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 83.3333 | 75.0000 | 93.7500 | 99.9211 | 12 | 4 | 15 | 1 | 1 | 100.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7905 | 99.6747 | 99.9066 | 41.3311 | 2145 | 7 | 2140 | 2 | 1 | 50.0000 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 95.1114 | 91.8919 | 98.5646 | 61.0075 | 204 | 18 | 206 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.7840 | 88.0000 | 93.7500 | 82.8571 | 44 | 6 | 45 | 3 | 1 | 33.3333 | |
| ltrigg-rtg1 | INDEL | * | map_l100_m0_e0 | hetalt | 90.4198 | 84.8485 | 96.7742 | 93.9216 | 28 | 5 | 30 | 1 | 1 | 100.0000 | |