PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50551-50600 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 94.5455 | 92.8571 | 96.2963 | 92.5000 | 26 | 2 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6014 | 91.7647 | 97.6190 | 90.6977 | 78 | 7 | 82 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | homalt | 94.7368 | 93.1034 | 96.4286 | 92.3288 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_siren | het | 93.8000 | 90.3571 | 97.5155 | 79.0228 | 253 | 27 | 314 | 8 | 1 | 12.5000 | |
| gduggal-bwafb | INDEL | D6_15 | segdup | het | 92.0280 | 85.8696 | 99.1379 | 92.8439 | 79 | 13 | 115 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | * | 90.9091 | 88.2353 | 93.7500 | 52.9412 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | tech_badpromoters | homalt | 92.3077 | 100.0000 | 85.7143 | 53.3333 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 70.5882 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 80.0000 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 54.2254 | 39.2857 | 87.5000 | 57.8947 | 11 | 17 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 38.8889 | 25.0000 | 87.5000 | 66.6667 | 4 | 12 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 51.8519 | 53.8462 | 50.0000 | 71.4286 | 7 | 6 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.5000 | 87.5000 | 87.5000 | 42.8571 | 7 | 1 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | map_siren | hetalt | 46.6667 | 43.7500 | 50.0000 | 77.7778 | 7 | 9 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | * | 98.6072 | 98.3333 | 98.8827 | 35.1449 | 177 | 3 | 177 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | func_cds | het | 97.5336 | 98.3051 | 96.7742 | 42.0561 | 58 | 1 | 60 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 63.6988 | 47.5728 | 96.3636 | 56.6929 | 98 | 108 | 53 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | I1_5 | map_l100_m1_e0 | het | 96.7920 | 94.9807 | 98.6737 | 82.4610 | 738 | 39 | 744 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e0 | het | 96.7924 | 94.9559 | 98.7013 | 83.9181 | 753 | 40 | 760 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e1 | het | 96.7959 | 94.9383 | 98.7277 | 84.0114 | 769 | 41 | 776 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | * | 97.0470 | 95.4839 | 98.6622 | 88.2791 | 296 | 14 | 295 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 86.7946 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | het | 96.4347 | 94.4444 | 98.5106 | 85.0794 | 459 | 27 | 463 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m1_e0 | homalt | 99.3902 | 99.6942 | 99.0881 | 84.2433 | 326 | 1 | 326 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | het | 96.4087 | 94.3662 | 98.5417 | 86.5509 | 469 | 28 | 473 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e0 | homalt | 99.4152 | 99.7067 | 99.1254 | 85.4907 | 340 | 1 | 340 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | het | 96.4880 | 94.4882 | 98.5743 | 86.6285 | 480 | 28 | 484 | 7 | 1 | 14.2857 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | homalt | 99.1304 | 99.7085 | 98.5591 | 85.6966 | 342 | 1 | 342 | 5 | 1 | 20.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | * | 96.8082 | 94.8864 | 98.8095 | 91.6584 | 167 | 9 | 166 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 90.3272 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1960 | 92.6421 | 97.8947 | 88.6091 | 277 | 22 | 279 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m1_e0 | homalt | 98.9950 | 99.4949 | 98.5000 | 87.8861 | 197 | 1 | 197 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1813 | 92.5566 | 97.9592 | 89.7023 | 286 | 23 | 288 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e0 | homalt | 99.0099 | 99.5025 | 98.5222 | 89.2706 | 200 | 1 | 200 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | het | 95.3061 | 92.7445 | 98.0132 | 89.7349 | 294 | 23 | 296 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | homalt | 98.7835 | 99.5098 | 98.0676 | 89.3683 | 203 | 1 | 203 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | * | 94.6860 | 92.4528 | 97.0297 | 95.6893 | 98 | 8 | 98 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | homalt | 97.7778 | 100.0000 | 95.6522 | 94.7846 | 44 | 0 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e0 | * | 95.0226 | 92.9204 | 97.2222 | 96.0855 | 105 | 8 | 105 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e0 | homalt | 97.8261 | 100.0000 | 95.7447 | 95.4938 | 45 | 0 | 45 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | * | 95.0673 | 92.9825 | 97.2477 | 96.1714 | 106 | 8 | 106 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | homalt | 97.8723 | 100.0000 | 95.8333 | 95.5597 | 46 | 0 | 46 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | het | 97.5959 | 96.6543 | 98.5560 | 94.9814 | 520 | 18 | 546 | 8 | 1 | 12.5000 | |
| gduggal-bwafb | INDEL | I1_5 | segdup | hetalt | 92.2122 | 89.5833 | 95.0000 | 97.6771 | 43 | 5 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | * | 90.0000 | 83.7209 | 97.2973 | 35.0877 | 36 | 7 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | func_cds | hetalt | 50.0000 | 50.0000 | 50.0000 | 33.3333 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 75.3363 | 63.6364 | 92.3077 | 82.1918 | 28 | 16 | 12 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 85.6957 | 76.2712 | 97.7778 | 48.8636 | 45 | 14 | 44 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l100_m0_e0 | * | 84.7458 | 75.7576 | 96.1538 | 87.0000 | 25 | 8 | 25 | 1 | 1 | 100.0000 | |