PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50151-50200 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | tv | map_l250_m1_e0 | het | 52.1057 | 35.3106 | 99.3701 | 97.9946 | 631 | 1156 | 631 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | * | 50.3112 | 33.6572 | 99.5893 | 97.7433 | 970 | 1912 | 970 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e0 | het | 54.0541 | 37.1134 | 99.4475 | 98.0089 | 720 | 1220 | 720 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | * | 50.6394 | 33.9506 | 99.5976 | 97.7410 | 990 | 1926 | 990 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_l250_m2_e1 | het | 54.4177 | 37.4555 | 99.4595 | 98.0055 | 736 | 1229 | 736 | 4 | 1 | 25.0000 | |
| gduggal-bwaplat | SNP | tv | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | decoy | * | 80.0000 | 80.0000 | 80.0000 | 99.9657 | 8 | 2 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | decoy | het | 78.9474 | 83.3333 | 75.0000 | 99.9698 | 5 | 1 | 6 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.6805 | 83.0746 | 99.8195 | 58.2831 | 1124 | 229 | 1106 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 98.3871 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.2558 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4359 | 100.0000 | 95.0000 | 93.7695 | 1 | 0 | 19 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| eyeh-varpipe | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 50.0000 | 75.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 90.6250 | 96.3387 | 0 | 0 | 29 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 82.3529 | 96.3830 | 0 | 0 | 14 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 94.5386 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 96.5517 | 94.9389 | 0 | 0 | 28 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 90.9091 | 94.3782 | 0 | 0 | 30 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 93.6170 | 95.7619 | 0 | 0 | 44 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 87.5000 | 95.8261 | 0 | 0 | 21 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 93.7500 | 96.1290 | 0 | 0 | 45 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 88.0000 | 96.1240 | 0 | 0 | 22 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 93.8776 | 96.1448 | 0 | 0 | 46 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 88.0000 | 96.2236 | 0 | 0 | 22 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 95.4545 | 94.7743 | 0 | 0 | 42 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | * | 0.0000 | 0.0000 | 95.6522 | 99.0488 | 0 | 0 | 22 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C1_5 | segdup | hetalt | 0.0000 | 0.0000 | 75.0000 | 99.0888 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.3684 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 95.2381 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.8571 | 94.1667 | 0 | 0 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 80.0000 | 94.8980 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 94.3662 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 85.7143 | 89.2308 | 0 | 0 | 6 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 75.0000 | 94.2857 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 72.7273 | 94.2105 | 0 | 0 | 8 | 3 | 1 | 33.3333 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 0.0000 | 88.8889 | 88.0000 | 0 | 0 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 80.0000 | 87.6543 | 0 | 0 | 8 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 83.3333 | 92.0000 | 0 | 0 | 5 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 50.0000 | 78.9474 | 0 | 0 | 2 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 50.0000 | 50.0000 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_siren | hetalt | 0.0000 | 0.0000 | 75.0000 | 92.5926 | 0 | 0 | 3 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | C6_15 | map_siren | homalt | 0.0000 | 0.0000 | 80.0000 | 95.6897 | 0 | 0 | 4 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 49.2308 | 33.3333 | 94.1176 | 77.0270 | 4 | 8 | 16 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 28.0702 | 16.6667 | 88.8889 | 82.0000 | 2 | 10 | 8 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 23.8185 | 13.7255 | 90.0000 | 71.4286 | 7 | 44 | 9 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 87.8261 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 87.5000 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |