PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49501-49550 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 83.0248 | 72.2847 | 97.5133 | 68.6969 | 6043 | 2317 | 6039 | 154 | 132 | 85.7143 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.0825 | 75.8761 | 96.8314 | 49.6990 | 18620 | 5920 | 18611 | 609 | 395 | 64.8604 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 84.2729 | 74.8150 | 96.4680 | 58.6163 | 7786 | 2621 | 7784 | 285 | 97 | 34.0351 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 84.7019 | 75.5446 | 96.3855 | 35.1952 | 5202 | 1684 | 5200 | 195 | 193 | 98.9744 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.5921 | 77.7149 | 97.7589 | 44.5846 | 5632 | 1615 | 5627 | 129 | 105 | 81.3953 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 37.5839 | 24.1033 | 85.2792 | 74.6461 | 168 | 529 | 168 | 29 | 9 | 31.0345 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.7551 | 27.4074 | 60.6557 | 81.1728 | 37 | 98 | 37 | 24 | 4 | 16.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 38.0952 | 23.6253 | 98.3051 | 64.2424 | 116 | 375 | 116 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 33.7079 | 21.1268 | 83.3333 | 85.3659 | 15 | 56 | 15 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 93.4170 | 87.7992 | 99.8027 | 58.9642 | 22265 | 3094 | 22261 | 44 | 35 | 79.5455 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.0896 | 87.2376 | 99.7831 | 59.6058 | 12885 | 1885 | 12884 | 28 | 19 | 67.8571 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 79.4760 | 66.4234 | 98.9130 | 80.7799 | 273 | 138 | 273 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 94.3828 | 89.4773 | 99.8574 | 56.4904 | 9107 | 1071 | 9104 | 13 | 13 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.2975 | 70.7032 | 98.4402 | 61.5346 | 8396 | 3479 | 8394 | 133 | 53 | 39.8496 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 79.4159 | 66.8404 | 97.8199 | 66.1276 | 4489 | 2227 | 4487 | 100 | 23 | 23.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 87.9523 | 78.9685 | 99.2424 | 47.1530 | 1179 | 314 | 1179 | 9 | 9 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 85.0109 | 74.4135 | 99.1279 | 56.8517 | 2728 | 938 | 2728 | 24 | 21 | 87.5000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 75.2576 | 62.8247 | 93.8257 | 69.9746 | 774 | 458 | 775 | 51 | 20 | 39.2157 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 61.6145 | 48.5714 | 84.2342 | 85.1703 | 187 | 198 | 187 | 35 | 5 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.6704 | 65.5385 | 98.3834 | 40.9277 | 426 | 224 | 426 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 87.7517 | 81.7259 | 94.7368 | 67.1785 | 161 | 36 | 162 | 9 | 8 | 88.8889 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 83.0598 | 71.3760 | 99.3174 | 53.6319 | 2910 | 1167 | 2910 | 20 | 10 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 81.0867 | 68.5777 | 99.1772 | 58.7467 | 1567 | 718 | 1567 | 13 | 5 | 38.4615 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 92.9480 | 87.0130 | 99.7519 | 36.5354 | 402 | 60 | 402 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 82.6526 | 70.7519 | 99.3664 | 48.9213 | 941 | 389 | 941 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 76.0000 | 98.2759 | 73.0233 | 57 | 18 | 57 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 53.8462 | 87.5000 | 93.7500 | 7 | 6 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 86.0465 | 75.5102 | 100.0000 | 26.0000 | 37 | 12 | 37 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 64.8649 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | * | 75.1793 | 60.7184 | 98.6817 | 93.9453 | 524 | 339 | 524 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | het | 77.0340 | 63.2826 | 98.4211 | 94.5205 | 374 | 217 | 374 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 78.2609 | 64.2857 | 100.0000 | 97.6501 | 9 | 5 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m0_e0 | homalt | 70.5000 | 54.6512 | 99.2958 | 90.2204 | 141 | 117 | 141 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | * | 82.4716 | 70.7792 | 98.7915 | 91.7846 | 1308 | 540 | 1308 | 16 | 6 | 37.5000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | het | 84.4444 | 73.8627 | 98.5651 | 92.5841 | 893 | 316 | 893 | 13 | 4 | 30.7692 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 73.6842 | 59.5745 | 96.5517 | 96.3151 | 28 | 19 | 28 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m1_e0 | homalt | 78.8991 | 65.3716 | 99.4859 | 87.5000 | 387 | 205 | 387 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_l100_m2_e0 | * | 82.9800 | 71.5405 | 98.7743 | 92.0775 | 1370 | 545 | 1370 | 17 | 7 | 41.1765 | |