PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49101-49150 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | C1_5 | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | segdup | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | C1_5 | segdup | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | * | * | 92.6621 | 87.0843 | 99.0034 | 65.2816 | 300042 | 44500 | 299917 | 3019 | 1851 | 61.3117 | |
| gduggal-bwaplat | INDEL | * | * | het | 92.4727 | 86.8430 | 98.8829 | 67.5454 | 168591 | 25542 | 168540 | 1904 | 839 | 44.0651 | |
| gduggal-bwaplat | INDEL | * | * | hetalt | 82.4487 | 71.6091 | 97.1551 | 71.6669 | 18072 | 7165 | 18066 | 529 | 513 | 96.9754 | |
| gduggal-bwaplat | INDEL | * | * | homalt | 94.8233 | 90.5786 | 99.4855 | 59.5744 | 113379 | 11793 | 113311 | 586 | 499 | 85.1536 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | * | 90.8863 | 84.3874 | 98.4697 | 61.0933 | 64926 | 12012 | 64799 | 1007 | 684 | 67.9245 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | het | 89.8971 | 82.6214 | 98.5779 | 61.4508 | 38181 | 8031 | 38126 | 550 | 282 | 51.2727 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | hetalt | 79.9153 | 68.2076 | 96.4751 | 78.0617 | 2523 | 1176 | 2518 | 92 | 88 | 95.6522 | |
| gduggal-bwaplat | INDEL | * | HG002complexvar | homalt | 93.8564 | 89.6215 | 98.5114 | 56.9159 | 24222 | 2805 | 24155 | 365 | 314 | 86.0274 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | * | 80.3779 | 69.5961 | 95.1127 | 70.6361 | 20851 | 9109 | 20843 | 1071 | 677 | 63.2120 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | het | 66.0619 | 55.5447 | 81.4921 | 84.3450 | 2274 | 1820 | 2272 | 516 | 182 | 35.2713 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | hetalt | 83.3202 | 71.6362 | 99.5583 | 64.0234 | 18038 | 7142 | 18031 | 80 | 66 | 82.5000 | |
| gduggal-bwaplat | INDEL | * | HG002compoundhet | homalt | 63.4446 | 78.5714 | 53.2020 | 84.3340 | 539 | 147 | 540 | 475 | 429 | 90.3158 | |
| gduggal-bwaplat | INDEL | * | decoy | * | 88.8889 | 80.0000 | 100.0000 | 99.9788 | 8 | 2 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | het | 80.0000 | 66.6667 | 100.0000 | 99.9877 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9050 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9296 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | func_cds | * | 93.3174 | 87.8652 | 99.4911 | 51.1194 | 391 | 54 | 391 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | func_cds | het | 91.1392 | 84.1121 | 99.4475 | 61.8143 | 180 | 34 | 180 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 69.2308 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | func_cds | homalt | 95.3917 | 91.5929 | 99.5192 | 34.3849 | 207 | 19 | 207 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 68.9830 | 54.5121 | 93.9135 | 78.7818 | 5491 | 4582 | 5493 | 356 | 149 | 41.8539 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.8666 | 51.1386 | 88.6695 | 86.4061 | 2066 | 1974 | 2066 | 264 | 62 | 23.4848 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.4105 | 51.3337 | 98.1491 | 56.8902 | 1963 | 1861 | 1962 | 37 | 36 | 97.2973 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 78.4779 | 66.1838 | 96.3816 | 73.7433 | 1462 | 747 | 1465 | 55 | 51 | 92.7273 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 70.5882 | 60.0000 | 85.7143 | 99.7433 | 12 | 8 | 12 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 76.1905 | 66.6667 | 88.8889 | 99.7817 | 8 | 4 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 50.0000 | 40.0000 | 66.6667 | 99.7432 | 2 | 3 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 85.3226 | 75.6324 | 97.8608 | 79.5261 | 71434 | 23015 | 71409 | 1561 | 832 | 53.2992 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 83.8912 | 73.6757 | 97.3956 | 82.4238 | 35564 | 12707 | 35564 | 951 | 276 | 29.0221 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 83.8527 | 73.6525 | 97.3325 | 72.7994 | 11355 | 4062 | 11348 | 311 | 304 | 97.7492 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 88.2228 | 79.6951 | 98.7942 | 76.5609 | 24515 | 6246 | 24497 | 299 | 252 | 84.2809 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 77.5469 | 65.0258 | 96.0400 | 78.6649 | 42495 | 22856 | 42490 | 1752 | 879 | 50.1712 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 73.3800 | 60.1280 | 94.1249 | 85.4676 | 18327 | 12153 | 18328 | 1144 | 321 | 28.0594 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 81.0947 | 69.5121 | 97.3091 | 55.1710 | 11612 | 5093 | 11608 | 321 | 314 | 97.8193 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.9828 | 69.1181 | 97.7650 | 72.5426 | 12556 | 5610 | 12554 | 287 | 244 | 85.0174 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 77.8626 | 66.2338 | 94.4444 | 82.1887 | 1428 | 728 | 1428 | 84 | 26 | 30.9524 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 75.0708 | 63.2962 | 92.2274 | 85.6453 | 795 | 461 | 795 | 67 | 11 | 16.4179 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 75.2713 | 61.0778 | 98.0583 | 75.8782 | 102 | 65 | 101 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 83.0355 | 72.4420 | 97.2578 | 73.4079 | 531 | 202 | 532 | 15 | 13 | 86.6667 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 71.4286 | 58.8235 | 90.9091 | 99.7884 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 77.7778 | 70.0000 | 87.5000 | 99.7959 | 7 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.6395 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 40.0000 | 25.0000 | 100.0000 | 99.9117 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 80.6080 | 68.7048 | 97.5000 | 81.0516 | 3517 | 1602 | 3510 | 90 | 34 | 37.7778 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 78.4458 | 66.0000 | 96.6764 | 83.1355 | 1980 | 1020 | 1978 | 68 | 17 | 25.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 77.3061 | 64.3777 | 96.7320 | 84.4828 | 150 | 83 | 148 | 5 | 4 | 80.0000 | |