PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4801-4850 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | * | het | 98.2484 | 97.1302 | 99.3926 | 71.9668 | 2640 | 78 | 2618 | 16 | 8 | 50.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | hetalt | 94.2306 | 89.1325 | 99.9472 | 55.4588 | 1870 | 228 | 1892 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | * | homalt | 97.4343 | 99.7438 | 95.2294 | 67.8023 | 1557 | 4 | 1557 | 78 | 76 | 97.4359 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | * | 97.8362 | 96.7150 | 98.9836 | 65.6644 | 1266 | 43 | 1266 | 13 | 12 | 92.3077 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | het | 98.7816 | 97.7444 | 99.8410 | 62.2675 | 650 | 15 | 628 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.6386 | 91.6418 | 100.0000 | 68.0583 | 307 | 28 | 329 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | HG002complexvar | homalt | 98.0952 | 100.0000 | 96.2617 | 68.7743 | 309 | 0 | 309 | 12 | 11 | 91.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | * | 92.4081 | 89.1741 | 95.8856 | 50.9476 | 1911 | 232 | 1911 | 82 | 81 | 98.7805 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | het | 83.6199 | 89.3617 | 78.5714 | 93.1540 | 42 | 5 | 22 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | hetalt | 94.2662 | 89.1543 | 100.0000 | 44.8215 | 1866 | 227 | 1886 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | HG002compoundhet | homalt | 7.3171 | 100.0000 | 3.7975 | 66.5254 | 3 | 0 | 3 | 76 | 75 | 98.6842 | |
| raldana-dualsentieon | INDEL | I16_PLUS | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | * | 90.9091 | 83.3333 | 100.0000 | 72.2222 | 10 | 2 | 10 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | het | 94.1176 | 88.8889 | 100.0000 | 57.8947 | 8 | 1 | 8 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 86.6667 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 92.9293 | 89.3204 | 96.8421 | 87.2226 | 184 | 22 | 184 | 6 | 2 | 33.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.7807 | 89.4737 | 96.3415 | 89.6985 | 85 | 10 | 79 | 3 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.5000 | 86.0465 | 100.0000 | 77.2080 | 74 | 12 | 80 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.3396 | 100.0000 | 89.2857 | 91.7647 | 25 | 0 | 25 | 3 | 2 | 66.6667 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 96.2878 | 94.3032 | 98.3577 | 77.3927 | 1076 | 65 | 1078 | 18 | 15 | 83.3333 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 96.9473 | 95.6422 | 98.2885 | 83.2788 | 417 | 19 | 402 | 7 | 4 | 57.1429 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 95.9028 | 92.2813 | 99.8201 | 63.6601 | 538 | 45 | 555 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 95.6522 | 99.1803 | 92.3664 | 84.9771 | 121 | 1 | 121 | 10 | 10 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 96.4946 | 94.4444 | 98.6357 | 82.7265 | 1445 | 85 | 1446 | 20 | 12 | 60.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.6866 | 94.7447 | 98.7097 | 85.9283 | 631 | 35 | 612 | 8 | 2 | 25.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 96.8974 | 99.0244 | 94.8598 | 89.7066 | 203 | 2 | 203 | 11 | 9 | 81.8182 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7136 | 95.3704 | 98.0952 | 88.4995 | 103 | 5 | 103 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.3357 | 93.9394 | 96.7742 | 87.8431 | 62 | 4 | 60 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 97.1429 | 94.4444 | 100.0000 | 84.4262 | 17 | 1 | 19 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.4591 | 24 | 0 | 24 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.8636 | 97.7528 | 100.0000 | 79.2115 | 174 | 4 | 174 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.5915 | 97.2222 | 100.0000 | 78.0851 | 105 | 3 | 103 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.5507 | 97.1429 | 100.0000 | 75.6757 | 34 | 1 | 36 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 84.0183 | 35 | 0 | 35 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 72.8659 | 89 | 0 | 89 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 71.3514 | 53 | 0 | 53 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 20 | 0 | 20 | 0 | 0 | ||