PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
46551-46600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 58.8469 | 92.5566 | 43.1364 | 52.0545 | 13529 | 1088 | 13550 | 17862 | 17494 | 97.9398 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 0.2688 | 0.0000 | 0.0000 | 37 | 13727 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 51.9644 | 35.2064 | 99.1674 | 46.2264 | 3352 | 6169 | 3335 | 28 | 25 | 89.2857 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 48.9009 | 46.9867 | 50.9776 | 50.1691 | 15032 | 16960 | 15018 | 14442 | 14205 | 98.3590 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 60.9906 | 94.2736 | 45.0765 | 50.8414 | 11804 | 717 | 11838 | 14424 | 14189 | 98.3708 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.2882 | 0.0000 | 0.0000 | 32 | 11073 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 55.1982 | 38.2022 | 99.4371 | 43.8652 | 3196 | 5170 | 3180 | 18 | 16 | 88.8889 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 51.4833 | 49.7958 | 53.2893 | 59.9443 | 21579 | 21756 | 21523 | 18866 | 18163 | 96.2737 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 62.4770 | 93.3666 | 46.9454 | 60.6415 | 16637 | 1182 | 16660 | 18828 | 18130 | 96.2928 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.2779 | 0.0000 | 0.0000 | 39 | 13993 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 59.7005 | 42.6942 | 99.2246 | 54.0503 | 4903 | 6581 | 4863 | 38 | 33 | 86.8421 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 59.6850 | 58.5729 | 60.8400 | 68.6799 | 38278 | 27073 | 38154 | 24558 | 22520 | 91.7013 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 68.5442 | 93.9928 | 53.9399 | 70.1347 | 28649 | 1831 | 28668 | 24480 | 22479 | 91.8260 | |
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3711 | 0.0000 | 0.0000 | 62 | 16643 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 68.7985 | 52.6643 | 99.1844 | 57.0543 | 9567 | 8599 | 9486 | 78 | 41 | 52.5641 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 60.8792 | 59.0648 | 62.8085 | 52.6630 | 21613 | 14979 | 21581 | 12779 | 12331 | 96.4942 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.3555 | 95.9010 | 54.3198 | 55.3205 | 15114 | 646 | 15165 | 12753 | 12310 | 96.5263 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.4010 | 0.0000 | 0.0000 | 42 | 10433 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 76.6857 | 62.3443 | 99.5964 | 36.2241 | 6457 | 3900 | 6416 | 26 | 21 | 80.7692 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 18.9766 | 17.5155 | 20.7036 | 55.4928 | 368 | 1733 | 359 | 1375 | 1359 | 98.8364 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 28.5438 | 64.6939 | 18.3115 | 55.1706 | 317 | 173 | 308 | 1374 | 1358 | 98.8355 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1252 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 24.8175 | 14.2061 | 98.0769 | 63.8889 | 51 | 308 | 51 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.9824 | 96.8153 | 97.1501 | 58.2231 | 27360 | 900 | 27373 | 803 | 642 | 79.9502 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.3750 | 99.4887 | 95.3492 | 61.3437 | 16345 | 84 | 16381 | 799 | 639 | 79.9750 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 2.0561 | 0.0000 | 0.0000 | 11 | 524 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6729 | 97.4150 | 99.9636 | 52.1934 | 11004 | 292 | 10992 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 76.0875 | 71.7742 | 80.9524 | 99.8808 | 89 | 35 | 119 | 28 | 20 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.4440 | 85.0575 | 78.1250 | 99.8790 | 74 | 13 | 100 | 28 | 20 | 71.4286 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 83.3333 | 71.4286 | 100.0000 | 99.8911 | 15 | 6 | 19 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 74.7445 | 74.1265 | 75.3730 | 58.4574 | 14723 | 5139 | 14700 | 4803 | 4251 | 88.5072 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.9421 | 97.2812 | 69.3022 | 61.0030 | 10806 | 302 | 10816 | 4791 | 4241 | 88.5201 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.4847 | 0.0000 | 0.0000 | 13 | 2669 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 78.1733 | 64.2951 | 99.6920 | 43.7482 | 3904 | 2168 | 3884 | 12 | 10 | 83.3333 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 31.9171 | 30.3578 | 33.6453 | 67.1740 | 806 | 1849 | 791 | 1560 | 1458 | 93.4615 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 46.3721 | 79.4421 | 32.7422 | 66.7816 | 769 | 199 | 757 | 1555 | 1454 | 93.5048 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.1674 | 0.0000 | 0.0000 | 2 | 1193 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 13.1543 | 7.1138 | 87.1795 | 80.6931 | 35 | 457 | 34 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 77.5159 | 76.4592 | 78.6021 | 48.9675 | 5148 | 1585 | 5128 | 1396 | 1280 | 91.6905 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 83.0702 | 98.1137 | 72.0266 | 52.1291 | 3589 | 69 | 3579 | 1390 | 1276 | 91.7986 | |
| gduggal-bwavard | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.4334 | 0.0000 | 0.0000 | 4 | 919 | 0 | 0 | 0 | ||