PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45251-45300 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 39.9604 | 56.2674 | 30.9816 | 39.7969 | 202 | 157 | 202 | 450 | 389 | 86.4444 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.7858 | 98.2767 | 99.3002 | 57.2345 | 27773 | 487 | 27812 | 196 | 123 | 62.7551 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7954 | 98.2348 | 99.3624 | 57.2660 | 16139 | 290 | 16208 | 104 | 51 | 49.0385 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 88.8215 | 82.4299 | 96.2877 | 75.1298 | 441 | 94 | 415 | 16 | 14 | 87.5000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2066 | 99.0882 | 99.3253 | 55.9755 | 11193 | 103 | 11189 | 76 | 58 | 76.3158 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 35.2764 | 21.7742 | 92.8571 | 99.9803 | 27 | 97 | 26 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 37.3832 | 22.9885 | 100.0000 | 99.9711 | 20 | 67 | 20 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 31.5789 | 18.7500 | 100.0000 | 99.9839 | 3 | 13 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 29.6296 | 19.0476 | 66.6667 | 99.9901 | 4 | 17 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 82.7904 | 78.6275 | 87.4187 | 53.2630 | 15617 | 4245 | 16259 | 2340 | 997 | 42.6068 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 82.5030 | 79.8704 | 85.3152 | 53.3915 | 8872 | 2236 | 10353 | 1782 | 570 | 31.9865 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 69.7822 | 60.7755 | 81.9227 | 56.9113 | 1630 | 1052 | 784 | 173 | 149 | 86.1272 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.4071 | 84.2391 | 93.0089 | 52.2708 | 5115 | 957 | 5122 | 385 | 278 | 72.2078 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 46.8255 | 38.7947 | 59.0491 | 58.6382 | 1030 | 1625 | 1155 | 801 | 315 | 39.3258 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 42.4890 | 35.9504 | 51.9347 | 63.3123 | 348 | 620 | 604 | 559 | 103 | 18.4258 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 46.9083 | 32.3849 | 85.0498 | 32.2072 | 387 | 808 | 256 | 45 | 39 | 86.6667 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 59.9593 | 59.9593 | 59.9593 | 55.8744 | 295 | 197 | 295 | 197 | 173 | 87.8173 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 90.8156 | 88.7866 | 92.9396 | 44.8670 | 5978 | 755 | 6279 | 477 | 242 | 50.7338 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.8048 | 89.3111 | 92.3494 | 45.1133 | 3267 | 391 | 4092 | 339 | 139 | 41.0029 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.4625 | 82.9902 | 88.0866 | 50.9735 | 766 | 157 | 244 | 33 | 29 | 87.8788 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 92.5726 | 90.3810 | 94.8730 | 43.3628 | 1945 | 207 | 1943 | 105 | 74 | 70.4762 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 56.1021 | 47.7477 | 68.0000 | 49.7487 | 106 | 116 | 136 | 64 | 26 | 40.6250 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.7099 | 38.0000 | 67.8261 | 54.3651 | 19 | 31 | 78 | 37 | 9 | 24.3243 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 60.2656 | 47.2000 | 83.3333 | 23.4043 | 59 | 66 | 30 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 58.3333 | 59.5745 | 57.1429 | 50.5051 | 28 | 19 | 28 | 21 | 12 | 57.1429 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | * | 92.7347 | 91.6827 | 93.8111 | 85.2162 | 1433 | 130 | 1440 | 95 | 22 | 23.1579 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | het | 92.0855 | 91.5769 | 92.5998 | 82.0643 | 935 | 86 | 951 | 76 | 13 | 17.1053 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | hetalt | 60.7460 | 57.5758 | 64.2857 | 94.2857 | 19 | 14 | 9 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | homalt | 95.6116 | 94.1061 | 97.1660 | 88.8033 | 479 | 30 | 480 | 14 | 7 | 50.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | * | 93.4753 | 91.3274 | 95.7267 | 83.9230 | 3275 | 311 | 3293 | 147 | 38 | 25.8503 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | het | 93.1246 | 91.6331 | 94.6655 | 81.5482 | 2048 | 187 | 2094 | 118 | 21 | 17.7966 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | hetalt | 60.3494 | 49.1935 | 78.0488 | 93.0034 | 61 | 63 | 32 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | homalt | 96.6439 | 95.0285 | 98.3151 | 86.5465 | 1166 | 61 | 1167 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | * | 93.4957 | 91.3079 | 95.7910 | 84.8783 | 3372 | 321 | 3391 | 149 | 39 | 26.1745 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | het | 93.1137 | 91.5475 | 94.7345 | 82.7714 | 2112 | 195 | 2159 | 120 | 22 | 18.3333 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | hetalt | 60.8114 | 49.6000 | 78.5714 | 93.3439 | 62 | 63 | 33 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | homalt | 96.6525 | 95.0040 | 98.3593 | 87.2369 | 1198 | 63 | 1199 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | * | 93.3057 | 90.9478 | 95.7892 | 85.0002 | 3416 | 340 | 3435 | 151 | 40 | 26.4901 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | het | 92.9455 | 91.2079 | 94.7505 | 82.9512 | 2137 | 206 | 2184 | 121 | 22 | 18.1818 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | hetalt | 59.5248 | 47.7273 | 79.0698 | 93.2917 | 63 | 69 | 34 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | homalt | 96.5853 | 94.9258 | 98.3037 | 87.2974 | 1216 | 65 | 1217 | 21 | 13 | 61.9048 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | * | 92.6762 | 91.7234 | 93.6490 | 88.7210 | 809 | 73 | 811 | 55 | 16 | 29.0909 | |