PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
45201-45250 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 71.6758 | 63.5678 | 82.1546 | 59.3969 | 10619 | 6086 | 3241 | 704 | 487 | 69.1761 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 81.2103 | 79.4781 | 83.0196 | 65.6096 | 14438 | 3728 | 14423 | 2950 | 2467 | 83.6271 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 67.0995 | 63.6364 | 70.9612 | 72.1865 | 1372 | 784 | 1410 | 577 | 119 | 20.6239 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 65.6349 | 65.9236 | 65.3487 | 72.3679 | 828 | 428 | 909 | 482 | 71 | 14.7303 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.7839 | 52.6946 | 52.8736 | 74.7093 | 88 | 79 | 46 | 41 | 18 | 43.9024 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 73.3639 | 62.2101 | 89.3910 | 71.1778 | 456 | 277 | 455 | 54 | 30 | 55.5556 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 82.7586 | 70.5882 | 100.0000 | 99.6599 | 12 | 5 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 94.7368 | 90.0000 | 100.0000 | 99.5183 | 9 | 1 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8539 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 70.1273 | 67.6890 | 72.7479 | 71.4311 | 3465 | 1654 | 3529 | 1322 | 311 | 23.5250 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 68.5238 | 70.7333 | 66.4482 | 68.8856 | 2122 | 878 | 2230 | 1126 | 242 | 21.4920 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 53.4225 | 56.2232 | 50.8876 | 80.9255 | 131 | 102 | 86 | 83 | 33 | 39.7590 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 75.4927 | 64.2630 | 91.4781 | 75.0188 | 1212 | 674 | 1213 | 113 | 36 | 31.8584 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 73.1048 | 71.1289 | 75.1936 | 73.0650 | 2577 | 1046 | 2622 | 865 | 237 | 27.3988 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 71.8249 | 74.6024 | 69.2468 | 69.8343 | 1595 | 543 | 1664 | 739 | 192 | 25.9811 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 53.8091 | 57.5758 | 50.5051 | 84.7692 | 76 | 56 | 50 | 49 | 21 | 42.8571 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 77.5741 | 66.9623 | 92.1827 | 77.2517 | 906 | 447 | 908 | 77 | 24 | 31.1688 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 52.1835 | 44.7148 | 62.6476 | 54.5878 | 2720 | 3363 | 3237 | 1930 | 985 | 51.0363 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 53.5889 | 45.7759 | 64.6178 | 56.5306 | 997 | 1181 | 2071 | 1134 | 332 | 29.2769 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 52.3244 | 38.4502 | 81.8636 | 44.8624 | 1047 | 1676 | 492 | 109 | 68 | 62.3853 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 53.0813 | 57.1912 | 49.5224 | 53.3105 | 676 | 506 | 674 | 687 | 585 | 85.1528 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.4845 | 74.4341 | 85.2701 | 46.6287 | 28212 | 9690 | 32580 | 5628 | 3335 | 59.2573 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 80.7791 | 74.7144 | 87.9154 | 43.6787 | 10921 | 3696 | 21956 | 3018 | 1053 | 34.8907 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 76.4134 | 67.0154 | 88.8773 | 44.0708 | 9224 | 4540 | 2557 | 320 | 196 | 61.2500 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 81.1651 | 84.7285 | 77.8894 | 53.1421 | 8067 | 1454 | 8067 | 2290 | 2086 | 91.0917 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 83.9649 | 79.7856 | 88.6063 | 45.8996 | 25525 | 6467 | 29373 | 3777 | 2366 | 62.6423 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 84.8407 | 79.4106 | 91.0680 | 42.1071 | 9943 | 2578 | 19902 | 1952 | 731 | 37.4488 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 81.2553 | 73.6695 | 90.5826 | 44.2627 | 8181 | 2924 | 2068 | 215 | 132 | 61.3953 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 85.1837 | 88.4652 | 82.1369 | 53.6130 | 7401 | 965 | 7403 | 1610 | 1503 | 93.3540 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 78.3192 | 73.5341 | 83.7704 | 54.2583 | 31866 | 11469 | 36291 | 7031 | 3645 | 51.8418 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 79.1914 | 73.9716 | 85.2037 | 51.7929 | 13181 | 4638 | 24318 | 4223 | 1294 | 30.6417 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 75.3642 | 66.6334 | 86.7280 | 50.6405 | 9350 | 4682 | 2640 | 404 | 232 | 57.4257 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 80.3927 | 81.2870 | 79.5178 | 59.9939 | 9335 | 2149 | 9333 | 2404 | 2119 | 88.1448 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 77.3261 | 72.6018 | 82.7081 | 62.1191 | 47446 | 17905 | 52604 | 10998 | 5193 | 47.2177 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 71.6758 | 63.5678 | 82.1546 | 59.3969 | 10619 | 6086 | 3241 | 704 | 487 | 69.1761 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 81.2103 | 79.4781 | 83.0196 | 65.6096 | 14438 | 3728 | 14423 | 2950 | 2467 | 83.6271 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 85.4037 | 81.6845 | 89.4777 | 43.9514 | 29890 | 6702 | 33045 | 3886 | 2450 | 63.0468 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 86.5531 | 82.3858 | 91.1644 | 45.8288 | 12984 | 2776 | 21554 | 2089 | 859 | 41.1202 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 80.6675 | 73.6706 | 89.1329 | 45.4946 | 7717 | 2758 | 2313 | 282 | 188 | 66.6667 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 87.2533 | 88.7226 | 85.8319 | 38.8447 | 9189 | 1168 | 9178 | 1515 | 1403 | 92.6073 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 39.2277 | 31.6516 | 51.5719 | 45.1410 | 665 | 1436 | 853 | 801 | 448 | 55.9301 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 34.6127 | 23.8776 | 62.8853 | 50.2149 | 117 | 373 | 510 | 301 | 47 | 15.6146 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 40.2163 | 27.6358 | 73.8220 | 36.9637 | 346 | 906 | 141 | 50 | 12 | 24.0000 | |