PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44451-44500 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.0798 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e0 | homalt | 97.2134 | 94.9739 | 99.5609 | 80.8017 | 11111 | 588 | 11111 | 49 | 20 | 40.8163 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | * | 96.3459 | 96.2620 | 96.4300 | 78.3975 | 31006 | 1204 | 31009 | 1148 | 531 | 46.2544 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | het | 95.8511 | 96.9945 | 94.7343 | 76.7883 | 19751 | 612 | 19754 | 1098 | 511 | 46.5392 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | hetalt | 92.3077 | 90.0000 | 94.7368 | 91.1215 | 18 | 2 | 18 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l150_m2_e1 | homalt | 97.2353 | 95.0114 | 99.5658 | 80.8094 | 11237 | 590 | 11237 | 49 | 20 | 40.8163 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | * | 93.7882 | 93.3489 | 94.2317 | 93.9033 | 1993 | 142 | 1993 | 122 | 43 | 35.2459 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | het | 93.1615 | 93.6255 | 92.7022 | 90.7097 | 1410 | 96 | 1410 | 111 | 38 | 34.2342 | |
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | map_l250_m0_e0 | homalt | 95.3393 | 92.6868 | 98.1481 | 96.7438 | 583 | 46 | 583 | 11 | 5 | 45.4545 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | * | 94.5000 | 94.2121 | 94.7896 | 89.4714 | 6804 | 418 | 6804 | 374 | 175 | 46.7914 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | het | 94.0213 | 95.4154 | 92.6675 | 86.7306 | 4537 | 218 | 4537 | 359 | 166 | 46.2396 | |
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | * | map_l250_m1_e0 | homalt | 95.4651 | 91.8798 | 99.3415 | 92.6863 | 2263 | 200 | 2263 | 15 | 9 | 60.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | * | 94.6894 | 94.5212 | 94.8581 | 89.8978 | 7453 | 432 | 7453 | 404 | 182 | 45.0495 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | het | 94.2359 | 95.6873 | 92.8278 | 87.5230 | 4970 | 224 | 4970 | 384 | 172 | 44.7917 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e0 | homalt | 95.6387 | 92.2561 | 99.2788 | 92.8119 | 2478 | 208 | 2478 | 18 | 10 | 55.5556 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | * | 94.6649 | 94.5286 | 94.8016 | 89.9551 | 7550 | 437 | 7550 | 414 | 185 | 44.6860 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | het | 94.2221 | 95.7257 | 92.7651 | 87.6052 | 5039 | 225 | 5039 | 393 | 175 | 44.5293 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_l250_m2_e1 | homalt | 95.5941 | 92.2001 | 99.2475 | 92.8509 | 2506 | 212 | 2506 | 19 | 10 | 52.6316 | |
| gduggal-snapfb | SNP | * | map_siren | * | 98.4685 | 98.6644 | 98.2733 | 60.5270 | 144275 | 1953 | 144278 | 2535 | 801 | 31.5976 | |
| gduggal-snapfb | SNP | * | map_siren | het | 98.1134 | 98.8438 | 97.3936 | 60.3479 | 89939 | 1052 | 89942 | 2407 | 760 | 31.5746 | |
| gduggal-snapfb | SNP | * | map_siren | hetalt | 96.3415 | 97.5309 | 95.1807 | 83.3333 | 79 | 2 | 79 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | map_siren | homalt | 99.0661 | 98.3701 | 99.7720 | 60.7462 | 54257 | 899 | 54257 | 124 | 41 | 33.0645 | |
| gduggal-snapfb | SNP | * | segdup | * | 98.9601 | 99.4941 | 98.4319 | 91.5712 | 27925 | 142 | 27933 | 445 | 34 | 7.6405 | |
| gduggal-snapfb | SNP | * | segdup | het | 98.5769 | 99.3590 | 97.8069 | 92.1233 | 17206 | 111 | 17215 | 386 | 16 | 4.1451 | |
| gduggal-snapfb | SNP | * | segdup | hetalt | 77.7778 | 100.0000 | 63.6364 | 96.7930 | 7 | 0 | 7 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | SNP | * | segdup | homalt | 99.6002 | 99.7114 | 99.4891 | 90.4625 | 10712 | 31 | 10711 | 55 | 17 | 30.9091 | |
| gduggal-snapfb | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | * | tech_badpromoters | * | 93.1343 | 99.3631 | 87.6404 | 63.5992 | 156 | 1 | 156 | 22 | 1 | 4.5455 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | het | 89.4118 | 98.7013 | 81.7204 | 64.3678 | 76 | 1 | 76 | 17 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | * | tech_badpromoters | homalt | 96.9697 | 100.0000 | 94.1176 | 62.7193 | 80 | 0 | 80 | 5 | 1 | 20.0000 | |
| gduggal-snapfb | SNP | ti | * | * | 99.4335 | 99.8078 | 99.0620 | 21.3991 | 2081510 | 4008 | 2082093 | 19715 | 1288 | 6.5331 | |
| gduggal-snapfb | SNP | ti | * | het | 99.2278 | 99.8088 | 98.6535 | 22.6951 | 1279446 | 2451 | 1279980 | 17470 | 996 | 5.7012 | |
| gduggal-snapfb | SNP | ti | * | hetalt | 78.4605 | 99.8282 | 64.6274 | 61.2500 | 581 | 1 | 581 | 318 | 23 | 7.2327 | |
| gduggal-snapfb | SNP | ti | * | homalt | 99.7832 | 99.8062 | 99.7602 | 19.1162 | 801483 | 1556 | 801532 | 1927 | 269 | 13.9595 | |
| gduggal-snapfb | SNP | ti | HG002complexvar | * | 99.2700 | 99.6259 | 98.9167 | 19.8956 | 506535 | 1902 | 507043 | 5553 | 819 | 14.7488 | |
| gduggal-snapfb | SNP | ti | HG002complexvar | het | 99.0494 | 99.5771 | 98.5273 | 20.1517 | 313435 | 1331 | 313897 | 4692 | 557 | 11.8713 | |
| gduggal-snapfb | SNP | ti | HG002complexvar | hetalt | 81.5842 | 99.5169 | 69.1275 | 54.1538 | 206 | 1 | 206 | 92 | 22 | 23.9130 | |
| gduggal-snapfb | SNP | ti | HG002complexvar | homalt | 99.6542 | 99.7054 | 99.6030 | 19.3776 | 192894 | 570 | 192940 | 769 | 240 | 31.2094 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | * | 85.8670 | 98.1291 | 76.3290 | 43.9481 | 17151 | 327 | 17345 | 5379 | 340 | 6.3209 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | het | 78.4798 | 97.2856 | 65.7667 | 46.9249 | 9247 | 258 | 9427 | 4907 | 174 | 3.5460 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | hetalt | 97.8831 | 99.8273 | 96.0133 | 26.9417 | 578 | 1 | 578 | 24 | 6 | 25.0000 | |
| gduggal-snapfb | SNP | ti | HG002compoundhet | homalt | 96.6035 | 99.0803 | 94.2476 | 38.7254 | 7326 | 68 | 7340 | 448 | 160 | 35.7143 | |