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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
44251-44300 / 86044 show all
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
87.5291
86.9258
88.1409
52.6080
1934129092014927111465
54.0391
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.3383
88.9709
89.7087
51.9572
7470926125961445343
23.7370
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
85.4215
78.1353
94.2062
35.5484
63861787206512767
52.7559
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
89.1553
96.5499
82.8127
57.5437
5485196548811391055
92.6251
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
86.7363
86.3984
87.0769
60.8804
2713642722809141691922
46.1022
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.6713
88.1806
87.1679
60.5788
121311626177502613591
22.6177
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
83.9960
76.5257
93.0825
45.8976
711021812449182112
61.5385
gduggal-snapfbINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
89.5657
94.4378
85.1716
64.2887
7895465789213741219
88.7191
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
91.8860
90.8028
92.9954
40.2854
2228322572311417411173
67.3751
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
93.4534
92.3513
94.5822
43.0987
961179614228815315
38.6503
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
88.5630
82.2103
95.9796
32.1478
5661122518867951
64.5570
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
92.8220
96.7435
89.2061
36.1513
70112367000847807
95.2774
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
49.6345
46.9154
52.6882
51.2725
327370343308167
54.2208
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
50.1596
42.9630
60.2524
58.3990
587719112619
15.0794
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
54.0864
41.3442
78.1818
30.8176
20328886246
25.0000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
44.7458
92.9577
29.4643
46.0241
66566158142
89.8734
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.4090
99.1601
99.6591
54.8028
25146213251448660
69.7674
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.3852
99.0251
99.7479
54.5094
14626144146413715
40.5405
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
95.0667
91.9708
98.3784
71.2062
3783336465
83.3333
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.6120
99.6463
99.5777
54.2814
1014236101394340
93.0233
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
01000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
01000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
91.0653
90.2147
91.9320
48.7934
10713116210768945395
41.7989
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
90.7313
91.0661
90.3989
49.5222
61166006685710208
29.2958
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
83.8207
76.4233
92.8036
43.9496
11413526194837
77.0833
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
94.5739
94.2717
94.8781
48.0950
34562103464187150
80.2139
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
60.4335
56.1688
65.3989
55.6013
692540705373177
47.4531
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
57.4519
55.8442
59.1549
62.6561
21517033623251
21.9828
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
62.5767
48.0000
89.8678
23.0508
3123382042321
91.3043
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
68.7500
83.7563
58.3039
53.7582
16532165118105
88.9831
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
96.0497
95.8548
96.2454
43.3162
3908169392215380
52.2876
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
96.1174
96.1050
96.1298
45.0129
21968924599935
35.3535
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
92.1833
90.4762
93.9560
39.3333
418441711110
90.9091
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
97.0354
97.2932
96.7790
40.3219
12943612924335
81.3953
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
69.8354
74.6667
65.5914
51.8135
5619613210
31.2500
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
70.7469
84.6154
60.7843
57.8512
11231202
10.0000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
77.2179
65.3061
94.4444
25.0000
32171711
100.0000
gduggal-snapfbINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
70.2703
100.0000
54.1667
50.0000
13013117
63.6364
gduggal-snapfbINDELD1_5map_l100_m0_e0*
95.2850
95.9444
94.6347
84.6424
82835829478
17.0213
gduggal-snapfbINDELD1_5map_l100_m0_e0het
94.5116
95.9391
93.1260
81.3150
56724569425
11.9048