PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
44151-44200 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | * | 0.0000 | 0.0000 | 0.0000 | 0 | 143 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | het | 0.0000 | 0.0000 | 0.0000 | 0 | 78 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 34 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | * | 0.0000 | 0.0000 | 0.0000 | 0 | 58 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | het | 0.0000 | 0.0000 | 0.0000 | 0 | 37 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | D1_5 | * | * | 96.2520 | 96.4735 | 96.0315 | 60.0578 | 141570 | 5175 | 142868 | 5904 | 2222 | 37.6355 | |
| gduggal-snapfb | INDEL | D1_5 | * | het | 96.7358 | 97.4935 | 95.9898 | 56.7536 | 85379 | 2195 | 91342 | 3816 | 775 | 20.3092 | |
| gduggal-snapfb | INDEL | D1_5 | * | hetalt | 84.1984 | 78.0771 | 91.3611 | 79.2100 | 7999 | 2246 | 3289 | 311 | 140 | 45.0161 | |
| gduggal-snapfb | INDEL | D1_5 | * | homalt | 97.4626 | 98.4998 | 96.4470 | 62.9841 | 48192 | 734 | 48237 | 1777 | 1307 | 73.5509 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | * | 94.7329 | 94.4337 | 95.0340 | 57.1180 | 30894 | 1821 | 31423 | 1642 | 692 | 42.1437 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | het | 94.7486 | 94.6159 | 94.8816 | 54.6441 | 19647 | 1118 | 20632 | 1113 | 329 | 29.5597 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | hetalt | 78.9505 | 73.7426 | 84.9498 | 82.4839 | 997 | 355 | 508 | 90 | 54 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | HG002complexvar | homalt | 96.3093 | 96.7164 | 95.9056 | 58.3612 | 10250 | 348 | 10283 | 439 | 309 | 70.3872 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | * | 80.1461 | 78.4226 | 81.9472 | 64.9485 | 9595 | 2640 | 10454 | 2303 | 1568 | 68.0851 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | het | 82.9422 | 78.7616 | 87.5915 | 48.3471 | 1361 | 367 | 6939 | 983 | 315 | 32.0448 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | hetalt | 86.5070 | 78.1323 | 96.8926 | 76.7383 | 7982 | 2234 | 3274 | 105 | 84 | 80.0000 | |
| gduggal-snapfb | INDEL | D1_5 | HG002compoundhet | homalt | 27.7922 | 86.5979 | 16.5522 | 77.7097 | 252 | 39 | 241 | 1215 | 1169 | 96.2140 | |
| gduggal-snapfb | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9653 | 4 | 0 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9690 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9493 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | func_cds | * | 98.4227 | 98.1132 | 98.7342 | 40.6015 | 156 | 3 | 156 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | func_cds | het | 98.2456 | 98.8235 | 97.6744 | 47.5610 | 84 | 1 | 84 | 2 | 1 | 50.0000 | |