PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43901-43950 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | homalt | 60.0000 | 50.0000 | 75.0000 | 97.7401 | 3 | 3 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | * | 82.8291 | 73.2809 | 95.2381 | 76.5845 | 373 | 136 | 380 | 19 | 17 | 89.4737 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | het | 84.5335 | 75.3571 | 96.2547 | 69.0972 | 211 | 69 | 257 | 10 | 9 | 90.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | hetalt | 64.3533 | 51.5152 | 85.7143 | 76.2712 | 51 | 48 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | homalt | 89.5161 | 85.3846 | 94.0678 | 84.8912 | 111 | 19 | 111 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | * | 84.6900 | 76.4398 | 94.9367 | 90.2107 | 146 | 45 | 150 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | het | 82.4566 | 71.7391 | 96.9388 | 89.5075 | 66 | 26 | 95 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdup | hetalt | 81.9277 | 69.3878 | 100.0000 | 90.0000 | 34 | 15 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | segdup | homalt | 91.1852 | 92.0000 | 90.3846 | 91.3333 | 46 | 4 | 47 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | * | 66.6667 | 52.9412 | 90.0000 | 54.5455 | 9 | 8 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | het | 46.1538 | 30.0000 | 100.0000 | 63.6364 | 3 | 7 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | tech_badpromoters | homalt | 83.3333 | 83.3333 | 83.3333 | 45.4545 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I16_PLUS | * | * | 0.0000 | 0.0314 | 0.0000 | 0.0000 | 2 | 6375 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | * | het | 0.0000 | 0.0736 | 0.0000 | 0.0000 | 2 | 2716 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2098 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1561 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | HG002complexvar | * | 0.0000 | 0.1528 | 0.0000 | 0.0000 | 2 | 1307 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | HG002complexvar | het | 0.0000 | 0.3008 | 0.0000 | 0.0000 | 2 | 663 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 335 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 309 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | HG002compoundhet | * | 0.0000 | 0.0467 | 0.0000 | 0.0000 | 1 | 2142 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | HG002compoundhet | het | 0.0000 | 2.1277 | 0.0000 | 0.0000 | 1 | 46 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2093 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 206 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 95 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 86 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 25 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 0.0876 | 0.0000 | 0.0000 | 1 | 1140 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 0.2294 | 0.0000 | 0.0000 | 1 | 435 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 583 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 122 | 0 | 0 | 0 | |||