PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43701-43750 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8261 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e0 | homalt | 99.1597 | 98.3333 | 100.0000 | 96.7367 | 59 | 1 | 59 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | * | 95.2128 | 96.7568 | 93.7173 | 95.2381 | 179 | 6 | 179 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | het | 93.6508 | 96.7213 | 90.7692 | 93.7137 | 118 | 4 | 118 | 12 | 1 | 8.3333 | |
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8947 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_l250_m2_e1 | homalt | 99.1597 | 98.3333 | 100.0000 | 96.8074 | 59 | 1 | 59 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | map_siren | * | 96.5488 | 96.9963 | 96.1054 | 82.0770 | 3423 | 106 | 3430 | 139 | 27 | 19.4245 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | het | 96.3818 | 97.5406 | 95.2502 | 79.8220 | 2221 | 56 | 2246 | 112 | 13 | 11.6071 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | hetalt | 75.7129 | 65.4762 | 89.7436 | 93.8583 | 55 | 29 | 35 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_siren | homalt | 98.1197 | 98.2021 | 98.0375 | 84.5627 | 1147 | 21 | 1149 | 23 | 11 | 47.8261 | |
| gduggal-snapfb | INDEL | D1_5 | segdup | * | 97.3404 | 97.4615 | 97.2197 | 94.7311 | 1075 | 28 | 1084 | 31 | 5 | 16.1290 | |
| gduggal-snapfb | INDEL | D1_5 | segdup | het | 97.2186 | 97.8324 | 96.6125 | 94.2604 | 677 | 15 | 713 | 25 | 3 | 12.0000 | |
| gduggal-snapfb | INDEL | D1_5 | segdup | hetalt | 90.5263 | 82.6923 | 100.0000 | 98.1308 | 43 | 9 | 14 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdup | homalt | 98.6157 | 98.8858 | 98.3471 | 95.1952 | 355 | 4 | 357 | 6 | 2 | 33.3333 | |
| gduggal-snapfb | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9941 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9904 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | * | 91.8919 | 89.4737 | 94.4444 | 57.1429 | 17 | 2 | 17 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 65.2174 | 7 | 1 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | tech_badpromoters | homalt | 94.7368 | 100.0000 | 90.0000 | 47.3684 | 9 | 0 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | * | * | 82.6720 | 75.4063 | 91.4873 | 42.8991 | 19675 | 6417 | 20441 | 1902 | 1873 | 98.4753 | |
| gduggal-snapfb | INDEL | D6_15 | * | het | 85.3034 | 77.5966 | 94.7099 | 36.4009 | 8995 | 2597 | 14269 | 797 | 773 | 96.9887 | |
| gduggal-snapfb | INDEL | D6_15 | * | hetalt | 74.5835 | 65.2679 | 87.0010 | 49.2731 | 5335 | 2839 | 850 | 127 | 126 | 99.2126 | |
| gduggal-snapfb | INDEL | D6_15 | * | homalt | 84.4844 | 84.4926 | 84.4762 | 53.3817 | 5345 | 981 | 5322 | 978 | 974 | 99.5910 | |
| gduggal-snapfb | INDEL | D6_15 | HG002complexvar | * | 75.6069 | 64.9189 | 90.5077 | 47.3259 | 3442 | 1860 | 3423 | 359 | 338 | 94.1504 | |
| gduggal-snapfb | INDEL | D6_15 | HG002complexvar | het | 75.2635 | 62.8205 | 93.8532 | 43.4007 | 1960 | 1160 | 2443 | 160 | 143 | 89.3750 | |
| gduggal-snapfb | INDEL | D6_15 | HG002complexvar | hetalt | 67.4067 | 59.7236 | 77.3585 | 57.4866 | 605 | 408 | 123 | 36 | 35 | 97.2222 | |
| gduggal-snapfb | INDEL | D6_15 | HG002complexvar | homalt | 79.2659 | 75.0214 | 84.0196 | 53.7834 | 877 | 292 | 857 | 163 | 160 | 98.1595 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | * | 72.3856 | 63.3263 | 84.4695 | 30.0529 | 5719 | 3312 | 6592 | 1212 | 1198 | 98.8449 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | het | 60.7617 | 44.3925 | 96.2540 | 19.2156 | 380 | 476 | 5730 | 223 | 211 | 94.6188 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | hetalt | 76.8495 | 65.2926 | 93.3775 | 40.5512 | 5322 | 2829 | 846 | 60 | 59 | 98.3333 | |
| gduggal-snapfb | INDEL | D6_15 | HG002compoundhet | homalt | 3.3072 | 70.8333 | 1.6931 | 58.2597 | 17 | 7 | 16 | 929 | 928 | 99.8924 | |
| gduggal-snapfb | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.7685 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.6656 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | func_cds | * | 82.0513 | 74.4186 | 91.4286 | 43.5484 | 32 | 11 | 32 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | func_cds | het | 83.8269 | 79.3103 | 88.8889 | 40.0000 | 23 | 6 | 24 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 52.9412 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 55.7305 | 44.0570 | 75.8202 | 34.2652 | 1731 | 2198 | 1872 | 597 | 591 | 98.9950 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 55.0460 | 40.3746 | 86.4662 | 35.5308 | 388 | 573 | 1150 | 180 | 175 | 97.2222 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 54.3642 | 39.0110 | 89.6450 | 28.3898 | 923 | 1443 | 303 | 35 | 34 | 97.1429 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.7902 | 69.7674 | 52.3096 | 34.3980 | 420 | 182 | 419 | 382 | 382 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 33.3333 | 100.0000 | 97.4684 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 80.0000 | 66.6667 | 100.0000 | 95.5556 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||