PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43251-43300 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 67.6742 | 98.1523 | 51.6392 | 81.2351 | 6534 | 123 | 6647 | 6225 | 139 | 2.2329 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 59.7519 | 97.7584 | 43.0248 | 79.6303 | 4143 | 95 | 4253 | 5632 | 101 | 1.7933 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 3.2258 | 100.0000 | 1.6393 | 75.6487 | 2 | 0 | 2 | 120 | 2 | 1.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 90.5197 | 98.8415 | 83.4904 | 85.3580 | 2389 | 28 | 2392 | 473 | 36 | 7.6110 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.9557 | 95.2253 | 71.9321 | 77.0498 | 29656 | 1487 | 30041 | 11722 | 436 | 3.7195 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 76.4238 | 95.1325 | 63.8642 | 77.1773 | 18626 | 953 | 18983 | 10741 | 319 | 2.9699 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 14.2857 | 100.0000 | 7.6923 | 80.7169 | 12 | 0 | 12 | 144 | 7 | 4.8611 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.1513 | 95.3774 | 92.9563 | 76.6652 | 11018 | 534 | 11046 | 837 | 110 | 13.1422 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 71.1247 | 96.9196 | 56.1741 | 75.2924 | 4688 | 149 | 4854 | 3787 | 159 | 4.1986 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 65.3789 | 96.5057 | 49.4344 | 75.2664 | 3038 | 110 | 3190 | 3263 | 93 | 2.8501 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 2.4691 | 100.0000 | 1.2500 | 60.9756 | 1 | 0 | 1 | 79 | 1 | 1.2658 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 87.2890 | 97.6896 | 78.8899 | 75.7087 | 1649 | 39 | 1663 | 445 | 65 | 14.6067 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 4.3344 | 87.5000 | 2.2222 | 78.2983 | 14 | 2 | 14 | 616 | 3 | 0.4870 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 2.9851 | 80.0000 | 1.5209 | 74.7722 | 8 | 2 | 8 | 518 | 2 | 0.3861 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 61.7647 | 0 | 0 | 0 | 26 | 1 | 3.8462 | ||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 14.2857 | 100.0000 | 7.6923 | 89.6000 | 6 | 0 | 6 | 72 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3876 | 99.6809 | 99.0961 | 47.6724 | 6248 | 20 | 6249 | 57 | 11 | 19.2982 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.2893 | 99.6556 | 98.9258 | 48.4715 | 4051 | 14 | 4052 | 44 | 5 | 11.3636 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.5691 | 99.7274 | 99.4112 | 46.0147 | 2195 | 6 | 2195 | 13 | 6 | 46.1538 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 89.9321 | 98.7700 | 82.5458 | 58.4226 | 10600 | 132 | 10674 | 2257 | 114 | 5.0510 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 85.9520 | 98.7396 | 76.0968 | 60.6268 | 6659 | 85 | 6730 | 2114 | 90 | 4.2573 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 18.1818 | 100.0000 | 10.0000 | 75.6098 | 1 | 0 | 1 | 9 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 97.7559 | 98.8212 | 96.7133 | 52.5820 | 3940 | 47 | 3943 | 134 | 24 | 17.9104 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.1142 | 85.1485 | 8.2932 | 83.7435 | 86 | 15 | 86 | 951 | 14 | 1.4721 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 10.6178 | 83.3333 | 5.6701 | 81.1174 | 55 | 11 | 55 | 915 | 8 | 0.8743 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 62.6263 | 88.5714 | 48.4375 | 94.7840 | 31 | 4 | 31 | 33 | 6 | 18.1818 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.6308 | 99.6416 | 93.7966 | 43.2141 | 3892 | 14 | 3901 | 258 | 11 | 4.2636 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2283 | 99.5561 | 91.2611 | 45.6295 | 2467 | 11 | 2475 | 237 | 8 | 3.3755 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 50.0000 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2685 | 99.7898 | 98.7526 | 38.0155 | 1424 | 3 | 1425 | 18 | 3 | 16.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 20.3390 | 100.0000 | 11.3208 | 89.1393 | 8 | 0 | 6 | 47 | 1 | 2.1277 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 17.0213 | 100.0000 | 9.3023 | 88.4409 | 6 | 0 | 4 | 39 | 1 | 2.5641 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 36.3636 | 100.0000 | 22.2222 | 92.1739 | 2 | 0 | 2 | 7 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||