PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
43101-43150 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2467 | 99.6334 | 98.8630 | 62.3274 | 10871 | 40 | 10869 | 125 | 24 | 19.2000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1501 | 99.7008 | 98.6054 | 62.2072 | 6998 | 21 | 7000 | 99 | 15 | 15.1515 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.3333 | 100.0000 | 71.4286 | 70.8333 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.4469 | 99.5112 | 99.3827 | 62.5253 | 3868 | 19 | 3864 | 24 | 9 | 37.5000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.9883 | 99.2888 | 85.6879 | 49.6867 | 7399 | 53 | 7430 | 1241 | 43 | 3.4650 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 88.7788 | 99.0616 | 80.4299 | 50.4389 | 4645 | 44 | 4677 | 1138 | 26 | 2.2847 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 40.0000 | 100.0000 | 25.0000 | 68.2540 | 5 | 0 | 5 | 15 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.2657 | 99.6737 | 96.8970 | 47.8485 | 2749 | 9 | 2748 | 88 | 17 | 19.3182 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 15.4525 | 83.3333 | 8.5158 | 71.3389 | 35 | 7 | 35 | 376 | 1 | 0.2660 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 14.5882 | 86.1111 | 7.9692 | 66.8654 | 31 | 5 | 31 | 358 | 1 | 0.2793 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 33.3333 | 66.6667 | 22.2222 | 92.5620 | 4 | 2 | 4 | 14 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 94.3491 | 99.6812 | 89.5584 | 44.0081 | 3439 | 11 | 3448 | 402 | 4 | 0.9950 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.9331 | 99.5790 | 85.3775 | 44.4518 | 2129 | 9 | 2137 | 366 | 4 | 1.0929 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 33.3333 | 100.0000 | 20.0000 | 50.0000 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.7189 | 99.8474 | 97.6155 | 43.1356 | 1309 | 2 | 1310 | 32 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 2.5000 | 100.0000 | 1.2658 | 65.6522 | 1 | 0 | 1 | 78 | 1 | 1.2821 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 2.8571 | 100.0000 | 1.4493 | 62.7027 | 1 | 0 | 1 | 68 | 1 | 1.4706 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 79.5455 | 0 | 0 | 0 | 9 | 0 | 0.0000 | ||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | * | 96.3071 | 96.6979 | 95.9195 | 73.9602 | 10718 | 366 | 10719 | 456 | 169 | 37.0614 | |
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | het | 95.8604 | 97.4661 | 94.3068 | 70.6611 | 7039 | 183 | 7040 | 425 | 163 | 38.3529 | |
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | hetalt | 93.7500 | 93.7500 | 93.7500 | 91.5344 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m0_e0 | homalt | 97.1883 | 95.2678 | 99.1879 | 78.6252 | 3664 | 182 | 3664 | 30 | 6 | 20.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | * | 97.5300 | 97.9838 | 97.0805 | 69.8683 | 24007 | 494 | 24008 | 722 | 232 | 32.1330 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | het | 97.0635 | 98.4108 | 95.7526 | 68.5715 | 15172 | 245 | 15172 | 673 | 223 | 33.1352 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | hetalt | 93.9759 | 95.1220 | 92.8571 | 85.7627 | 39 | 2 | 39 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m1_e0 | homalt | 98.3618 | 97.2686 | 99.4798 | 71.8035 | 8796 | 247 | 8797 | 46 | 9 | 19.5652 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | * | 97.5647 | 98.0226 | 97.1111 | 71.6649 | 24538 | 495 | 24539 | 730 | 232 | 31.7808 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | het | 97.1053 | 98.4471 | 95.7997 | 70.6844 | 15532 | 245 | 15532 | 681 | 223 | 32.7460 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | hetalt | 94.1176 | 95.2381 | 93.0233 | 86.3924 | 40 | 2 | 40 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e0 | homalt | 98.3869 | 97.3084 | 99.4896 | 73.1420 | 8966 | 248 | 8967 | 46 | 9 | 19.5652 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | * | 97.5848 | 98.0422 | 97.1318 | 71.7053 | 24788 | 495 | 24789 | 732 | 232 | 31.6940 | |
| gduggal-snapfb | SNP | tv | map_l100_m2_e1 | het | 97.1282 | 98.4628 | 95.8293 | 70.7561 | 15693 | 245 | 15693 | 683 | 223 | 32.6501 | |