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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
42951-43000 / 86044 show all
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
56.1615
41.5637
86.5642
60.9124
339747763434533458
85.9287
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
68.7702
67.0305
70.6027
63.8943
38081873547122781700
74.6269
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
59.2431
51.8849
69.0334
76.6255
16296151122114794864195
44.2231
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
57.2793
53.5509
61.5656
80.5733
736763901011463141790
28.3497
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
54.8241
40.1571
86.3699
66.0570
373155603783597508
85.0921
gduggal-snapplatINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
67.4881
62.1770
73.7913
70.7459
51983162725025751897
73.6699
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50*
70.3371
62.5265
80.3777
56.0717
1534491961838844892592
57.7411
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50het
70.5032
65.2830
76.6308
62.2986
67943613841125651113
43.3918
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
63.9702
49.9564
88.9115
43.5949
344034463496436391
89.6789
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
75.5346
70.5119
81.3276
50.1751
51102137648114881088
73.1183
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_51to200*
17.1882
12.9125
25.6972
75.4883
90607129373191
51.2064
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_51to200het
19.2870
17.7778
21.0762
81.7661
241114717645
25.5682
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
17.5627
9.9796
73.1343
69.4064
49442491814
77.7778
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
18.8667
23.9437
15.5660
65.0165
175433179132
73.7430
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
92.8911
87.3497
99.1833
60.3693
2215132082222518336
19.6721
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
92.4957
86.7773
99.0210
60.7081
1281719531284612718
14.1732
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
74.3629
60.5839
96.2547
84.1166
249162257106
60.0000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
94.1021
89.2612
99.4983
58.0297
9085109391224612
26.0870
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
01000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
01000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
59.3370
47.9747
77.7515
66.6856
5697617882302355819
34.7771
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
57.7607
47.6176
73.3945
69.4184
3198351847201711398
23.2613
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
41.1620
27.4615
82.1429
68.1214
41010834149076
84.4444
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
68.1699
56.9831
84.8219
60.1659
208915773096554345
62.2744
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200*
29.6071
24.5130
37.3737
73.8468
302930481806369
45.7816
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200het
28.4088
28.0519
28.7749
80.0908
108277202500107
21.4000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
23.8140
14.0000
79.6460
57.8358
91559902317
73.9130
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
45.3517
52.2843
40.0424
58.1189
10394189283245
86.5724
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
63.8520
52.6367
81.1407
57.2311
214619313201744345
46.3710
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50het
64.6148
54.0919
80.2207
60.1084
123610491890466171
36.6953
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
43.5045
31.1688
72.0000
59.1837
1443181445649
87.5000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
68.3405
57.5940
84.0173
50.8840
7665641167222125
56.3063
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_51to200*
32.0725
30.6667
33.6134
68.6842
2352407944
55.6962
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_51to200het
29.1667
53.8462
20.0000
79.3388
76104013
32.5000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
17.2414
10.2041
55.5556
59.0909
544543
75.0000
gduggal-snapplatINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
55.8376
84.6154
41.6667
48.2759
112253528
80.0000
gduggal-snapplatINDELD1_5map_l100_m0_e0*
84.4218
78.4473
91.3813
92.4805
6771867747317
23.2877
gduggal-snapplatINDELD1_5map_l100_m0_e0het
84.6379
80.8799
88.7622
92.9498
4781135456916
23.1884
gduggal-snapplatINDELD1_5map_l100_m0_e0hetalt
31.5789
21.4286
60.0000
98.9562
311321
50.0000
gduggal-snapplatINDELD1_5map_l100_m0_e0homalt
86.0150
75.9690
99.1228
89.0173
1966222620
0.0000