PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42151-42200 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 22.3230 | 16.2712 | 35.5425 | 80.2066 | 432 | 2223 | 606 | 1099 | 407 | 37.0337 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 18.7853 | 15.3926 | 24.0964 | 85.0898 | 149 | 819 | 240 | 756 | 119 | 15.7407 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.9971 | 10.7113 | 83.8926 | 61.0966 | 128 | 1067 | 125 | 24 | 18 | 75.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 36.3779 | 31.5041 | 43.0357 | 63.8943 | 155 | 337 | 241 | 319 | 270 | 84.6395 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 53.7099 | 42.3437 | 73.4172 | 63.2026 | 2851 | 3882 | 3850 | 1394 | 367 | 26.3271 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 52.7157 | 43.0290 | 68.0310 | 66.2410 | 1574 | 2084 | 2194 | 1031 | 178 | 17.2648 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 42.3946 | 28.6024 | 81.8750 | 58.3875 | 264 | 659 | 262 | 58 | 51 | 87.9310 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 59.8233 | 47.0725 | 82.0483 | 56.7574 | 1013 | 1139 | 1394 | 305 | 138 | 45.2459 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 27.5097 | 21.6216 | 37.8049 | 73.8854 | 48 | 174 | 62 | 102 | 48 | 47.0588 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 16.5275 | 18.0000 | 15.2778 | 83.3333 | 9 | 41 | 11 | 61 | 15 | 24.5902 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 20.8696 | 12.0000 | 80.0000 | 51.2195 | 15 | 110 | 16 | 4 | 3 | 75.0000 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 49.8073 | 51.0638 | 48.6111 | 53.5484 | 24 | 23 | 35 | 37 | 30 | 81.0811 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | * | 80.3694 | 72.9367 | 89.4891 | 92.8627 | 1140 | 423 | 1226 | 144 | 20 | 13.8889 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | het | 80.0362 | 74.4368 | 86.5466 | 93.5607 | 760 | 261 | 817 | 127 | 18 | 14.1732 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | hetalt | 24.6914 | 15.1515 | 66.6667 | 99.0491 | 5 | 28 | 4 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m0_e0 | homalt | 83.5293 | 73.6739 | 96.4286 | 89.2418 | 375 | 134 | 405 | 15 | 1 | 6.6667 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | * | 79.9637 | 72.2811 | 89.4737 | 91.2096 | 2592 | 994 | 2822 | 332 | 38 | 11.4458 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | het | 79.4811 | 73.6018 | 86.3811 | 92.1058 | 1645 | 590 | 1795 | 283 | 31 | 10.9541 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | hetalt | 21.5440 | 12.9032 | 65.2174 | 98.3076 | 16 | 108 | 15 | 8 | 5 | 62.5000 | |
| gduggal-snapplat | INDEL | * | map_l100_m1_e0 | homalt | 84.8014 | 75.8761 | 96.1064 | 87.1554 | 931 | 296 | 1012 | 41 | 2 | 4.8781 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | * | 80.0736 | 72.4343 | 89.5141 | 91.6820 | 2675 | 1018 | 2911 | 341 | 39 | 11.4370 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | het | 79.5566 | 73.6888 | 86.4399 | 92.5370 | 1700 | 607 | 1855 | 291 | 32 | 10.9966 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | hetalt | 22.4330 | 13.6000 | 64.0000 | 98.2970 | 17 | 108 | 16 | 9 | 5 | 55.5556 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e0 | homalt | 84.9002 | 75.9715 | 96.2072 | 87.8170 | 958 | 303 | 1040 | 41 | 2 | 4.8781 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | * | 79.8823 | 72.1512 | 89.4689 | 91.7596 | 2710 | 1046 | 2948 | 347 | 39 | 11.2392 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | het | 79.3653 | 73.4102 | 86.3720 | 92.6210 | 1720 | 623 | 1876 | 296 | 32 | 10.8108 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | hetalt | 21.2999 | 12.8788 | 61.5385 | 98.2562 | 17 | 115 | 16 | 10 | 5 | 50.0000 | |
| gduggal-snapplat | INDEL | * | map_l100_m2_e1 | homalt | 84.9123 | 75.9563 | 96.2625 | 87.8918 | 973 | 308 | 1056 | 41 | 2 | 4.8781 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | * | 79.7334 | 72.3356 | 88.8166 | 94.7534 | 638 | 244 | 683 | 86 | 13 | 15.1163 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | het | 79.4200 | 74.1056 | 85.5556 | 95.1768 | 435 | 152 | 462 | 78 | 12 | 15.3846 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | hetalt | 26.6667 | 18.1818 | 50.0000 | 99.5943 | 2 | 9 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m0_e0 | homalt | 81.8078 | 70.7746 | 96.9163 | 92.3518 | 201 | 83 | 220 | 7 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | * | 81.4439 | 74.1813 | 90.2830 | 92.9787 | 1563 | 544 | 1691 | 182 | 25 | 13.7363 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | het | 80.6812 | 75.2060 | 87.0161 | 93.7402 | 1004 | 331 | 1079 | 161 | 24 | 14.9068 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | hetalt | 35.9102 | 22.5000 | 88.8889 | 99.0405 | 9 | 31 | 8 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m1_e0 | homalt | 84.6016 | 75.1366 | 96.7949 | 89.4755 | 550 | 182 | 604 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | * | 81.6618 | 74.5446 | 90.2813 | 93.3861 | 1637 | 559 | 1765 | 190 | 25 | 13.1579 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | het | 80.7999 | 75.4853 | 86.9195 | 94.1195 | 1050 | 341 | 1123 | 169 | 24 | 14.2012 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | hetalt | 37.6569 | 23.8095 | 90.0000 | 99.0440 | 10 | 32 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | homalt | 84.9635 | 75.6225 | 96.9372 | 90.0183 | 577 | 186 | 633 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | * | 81.5919 | 74.4270 | 90.2834 | 93.4615 | 1656 | 569 | 1784 | 192 | 25 | 13.0208 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | het | 80.8011 | 75.4972 | 86.9066 | 94.1914 | 1063 | 345 | 1135 | 171 | 24 | 14.0351 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | hetalt | 36.9610 | 23.2558 | 90.0000 | 99.0548 | 10 | 33 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | homalt | 84.7865 | 75.3230 | 96.9697 | 90.1183 | 583 | 191 | 640 | 20 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | * | 78.7001 | 71.7899 | 87.0824 | 96.1959 | 369 | 145 | 391 | 58 | 10 | 17.2414 | |
| gduggal-snapplat | INDEL | * | map_l150_m0_e0 | het | 78.1739 | 73.9003 | 82.9721 | 96.4230 | 252 | 89 | 268 | 55 | 9 | 16.3636 | |