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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
41751-41800 / 86044 show all
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
52.3943
37.9325
84.6777
63.9143
522985565018908475
52.3128
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
46.0578
34.1432
70.7450
74.8821
132125481168483147
30.4348
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
52.8724
36.5157
95.7721
51.7559
259745152605115100
86.9565
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
59.0350
46.7546
80.0643
63.0729
131114931245310228
73.5484
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
57.2983
42.6638
87.2144
64.2116
472863544543666344
51.6517
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
50.1059
37.3855
75.9467
75.6447
122420501083343104
30.3207
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
59.2422
42.8650
95.8708
51.4971
23313107234510190
89.1089
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
62.1202
49.4937
83.3957
63.4400
117311971115222150
67.5676
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
51.3775
37.0578
83.7332
64.5819
5479930652351017480
47.1976
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
44.4716
32.8160
68.9674
74.6267
145929871289580148
25.5172
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
52.7132
36.3814
95.6522
52.4661
261045642618119102
85.7143
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
57.4030
44.5498
80.6804
63.6484
141017551328318230
72.3270
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
48.8268
34.5142
83.4201
65.6853
60991157257661146527
45.9860
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
41.0970
29.3534
68.5039
74.9565
171641301479680172
25.2941
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
51.1480
34.9051
95.6654
53.7872
281352462825128108
84.3750
gduggal-snapplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
55.0977
41.6888
81.2222
64.9260
157021961462338247
73.0769
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
60.7128
46.4157
87.7382
45.3351
439050684236592317
53.5473
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
52.9926
40.3952
77.0079
55.5166
1104162997829297
33.2192
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
62.7608
46.6890
95.7058
37.3301
22282544225110189
88.1188
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
65.7127
54.1731
83.4992
45.7734
10588951007199131
65.8291
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
24.3587
15.4953
56.9132
61.6995
18399817713497
72.3881
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
20.6825
16.8919
26.6667
71.6981
25123205529
52.7273
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
21.9561
12.5000
90.1639
55.1471
1097631101210
83.3333
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
35.0186
30.4348
41.2281
58.5455
49112476758
86.5672
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
39.6010
27.0677
73.7500
90.5101
7219459214
19.0476
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
33.1361
22.5806
62.2222
91.9210
3512028171
5.8824
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
34.0426
21.6216
80.0000
86.6667
829822
100.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
54.9650
39.1892
92.0000
88.1517
29452321
50.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
6.7797
3.5088
100.0000
99.9898
255100
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
9.0909
4.7619
100.0000
99.9785
240100
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
09000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
06000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
36.7443
23.6507
82.3171
53.0758
872281581017464
36.7816
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
31.9191
20.6647
70.0935
57.9568
342131330012830
23.4375
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
38.1468
23.7733
96.4789
45.0677
281901274107
70.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
43.8001
29.2941
86.7647
51.6014
2496012363627
75.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
23.7665
14.5247
65.3430
41.4376
19111241819638
39.5833
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
16.5989
10.9091
34.6939
47.3118
36294346412
18.7500
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
22.9356
12.9887
97.9381
34.8993
1036909522
100.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
37.9562
27.0833
63.4146
40.5797
52140523024
80.0000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
46.0973
30.8671
90.9962
43.3225
53411964754719
40.4255
gduggal-snapplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
43.3030
29.1607
84.0796
50.0000
205498169327
21.8750