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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
41651-41700 / 86044 show all
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
53.9147
55.1698
52.7154
94.4211
71558172865358
8.8821
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
48.7545
54.7591
43.9366
94.6836
46638547160136
5.9900
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
100.0000
01000
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
66.9912
56.0811
83.1715
93.2356
2491952575222
42.3077
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
56.5111
56.6123
56.4103
93.4064
62547963849343
8.7221
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
51.0719
55.5556
47.2579
93.7840
40032040545226
5.7522
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
100.0000
01000
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
69.4882
58.7467
85.0365
91.8258
2251582334117
41.4634
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
83.7447
84.4675
83.0341
89.9808
562310345643115377
6.6782
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
79.9814
83.6479
76.6228
91.4225
35456933553108449
4.5203
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
50.0000
50.0000
50.0000
97.1831
11110
0.0000
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.0644
85.9330
96.8475
84.2543
207734020896828
41.1765
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.5433
87.3487
91.8510
85.8019
272033940272882421244
10.0785
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.6106
86.8839
88.3495
88.3802
170112568170702251184
8.1741
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
88.0000
91.6667
84.6154
94.6058
1111121
50.0000
gduggal-snapplatSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
92.9747
88.1319
98.3807
75.7191
1018113711020716859
35.1190
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50*
80.6495
78.6024
82.8061
85.2794
38021035384879994
11.7647
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50het
77.5375
77.3507
77.7253
87.2862
2435713246770754
7.6379
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.0000
95.2381
01011
100.0000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
86.9295
80.9834
93.8179
77.6360
136732113819139
42.8571
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_51to200*
37.2093
50.0000
29.6296
98.7677
888190
0.0000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_51to200het
18.7500
30.0000
13.6364
98.7945
373190
0.0000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
98.6264
51500
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapplatSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
96.7832
94.0810
99.6452
50.9082
58973715898214
19.0476
gduggal-snapplatSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
96.5046
93.7269
99.4518
53.6591
38102553810214
19.0476
gduggal-snapplatSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
83.3333
20200
gduggal-snapplatSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
97.2935
94.7297
100.0000
44.7856
2085116208600
gduggal-snapplatINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9965
10100
gduggal-snapplatINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9952
10100
gduggal-snapplatINDELD1_5segdupwithalthetalt
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
gduggal-snapplatINDELD1_5tech_badpromoters*
60.1093
57.8947
62.5000
76.8116
1181061
16.6667
gduggal-snapplatINDELD1_5tech_badpromotershet
51.9481
62.5000
44.4444
81.2500
53451
20.0000
gduggal-snapplatINDELD1_5tech_badpromotershetalt
0.0000
100.0000
02000
gduggal-snapplatINDELD1_5tech_badpromotershomalt
75.0000
66.6667
85.7143
65.0000
63610
0.0000
gduggal-snapplatINDELD6_15**
49.9163
35.9727
81.5114
64.7243
93861670680681830539
29.4536
gduggal-snapplatINDELD6_15*het
45.6195
33.7388
70.4153
67.7429
3911768130181268180
14.1956
gduggal-snapplatINDELD6_15*hetalt
51.3567
35.1358
95.3989
60.4943
287253022882139111
79.8561
gduggal-snapplatINDELD6_15*homalt
55.1666
41.1476
83.6743
63.6351
260337232168423248
58.6288
gduggal-snapplatINDELD6_15HG002complexvar*
44.3210
31.1015
77.0858
66.5750
164936531312390129
33.0769
gduggal-snapplatINDELD6_15HG002complexvarhet
38.9411
26.8910
70.5590
64.8625
839228156823724
10.1266
gduggal-snapplatINDELD6_15HG002complexvarhetalt
48.9308
33.8598
88.1797
67.9303
3436703735039
78.0000
gduggal-snapplatINDELD6_15HG002complexvarhomalt
52.8983
39.9487
78.2700
68.0162
46770237110366
64.0777
gduggal-snapplatINDELD6_15HG002compoundhet*
47.6068
33.6951
81.0840
49.2004
304359882962691439
63.5311
gduggal-snapplatINDELD6_15HG002compoundhethet
18.8426
19.6262
18.1193
66.4873
16868879357161
45.0980