PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41251-41300 / 86044 show all | |||||||||||||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 90.3474 | 85.5479 | 95.7174 | 70.9701 | 9181 | 1551 | 9186 | 411 | 54 | 13.1387 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 89.2479 | 85.0979 | 93.8235 | 76.4116 | 5739 | 1005 | 5742 | 378 | 40 | 10.5820 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.2399 | 86.3055 | 99.0506 | 51.0836 | 3441 | 546 | 3443 | 33 | 14 | 42.4242 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 23.2323 | 22.7723 | 23.7113 | 98.6305 | 23 | 78 | 23 | 74 | 6 | 8.1081 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 17.8082 | 19.6970 | 16.2500 | 98.7063 | 13 | 53 | 13 | 67 | 2 | 2.9851 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 38.4615 | 28.5714 | 58.8235 | 98.1006 | 10 | 25 | 10 | 7 | 4 | 57.1429 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.7792 | 85.7399 | 98.7338 | 51.3537 | 3349 | 557 | 3353 | 43 | 4 | 9.3023 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.9492 | 84.7458 | 98.1326 | 57.0052 | 2100 | 378 | 2102 | 40 | 4 | 10.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.2439 | 87.5263 | 99.7608 | 37.2372 | 1249 | 178 | 1251 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 42.1053 | 50.0000 | 36.3636 | 98.1002 | 4 | 4 | 4 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 33.3333 | 25.0000 | 98.3968 | 2 | 4 | 2 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.2500 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | * | 93.4813 | 91.1488 | 95.9364 | 78.9527 | 19844 | 1927 | 19855 | 841 | 482 | 57.3127 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | het | 93.3645 | 92.7197 | 94.0184 | 82.6234 | 12965 | 1018 | 12983 | 826 | 467 | 56.5375 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | hetalt | 80.0000 | 85.7143 | 75.0000 | 81.3953 | 12 | 2 | 12 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m0_e0 | homalt | 93.7346 | 88.3329 | 99.8399 | 63.4054 | 6867 | 907 | 6860 | 11 | 11 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | * | 95.7091 | 94.2918 | 97.1698 | 74.6083 | 45195 | 2736 | 45216 | 1317 | 683 | 51.8603 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | het | 95.4495 | 95.2475 | 95.6523 | 78.8806 | 28519 | 1423 | 28557 | 1298 | 664 | 51.1556 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | hetalt | 85.7143 | 93.1034 | 79.4118 | 79.6407 | 27 | 2 | 27 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m1_e0 | homalt | 96.1786 | 92.7004 | 99.9279 | 60.1160 | 16649 | 1311 | 16632 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | * | 95.7724 | 94.3751 | 97.2116 | 76.1299 | 46207 | 2754 | 46228 | 1326 | 687 | 51.8100 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | het | 95.5194 | 95.3171 | 95.7225 | 80.1164 | 29188 | 1434 | 29226 | 1306 | 667 | 51.0720 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | hetalt | 86.1538 | 93.3333 | 80.0000 | 81.7708 | 28 | 2 | 28 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e0 | homalt | 96.2308 | 92.8014 | 99.9235 | 62.6446 | 16991 | 1318 | 16974 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | * | 95.8022 | 94.4145 | 97.2313 | 76.1409 | 46721 | 2764 | 46742 | 1331 | 691 | 51.9159 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | het | 95.5522 | 95.3521 | 95.7532 | 80.1277 | 29521 | 1439 | 29559 | 1311 | 671 | 51.1823 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | hetalt | 86.5672 | 93.5484 | 80.5556 | 81.3472 | 29 | 2 | 29 | 7 | 7 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l100_m2_e1 | homalt | 96.2554 | 92.8463 | 99.9243 | 62.6415 | 17171 | 1323 | 17154 | 13 | 13 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | * | 91.6685 | 88.4893 | 95.0846 | 83.9409 | 11293 | 1469 | 11297 | 584 | 340 | 58.2192 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | het | 91.6658 | 90.4877 | 92.8749 | 86.7400 | 7477 | 786 | 7482 | 574 | 330 | 57.4913 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | hetalt | 75.0000 | 75.0000 | 75.0000 | 87.3016 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m0_e0 | homalt | 91.7078 | 84.8363 | 99.7904 | 71.0087 | 3810 | 681 | 3809 | 8 | 8 | 100.0000 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | * | 94.1774 | 92.2277 | 96.2113 | 79.7747 | 27055 | 2280 | 27070 | 1066 | 586 | 54.9719 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | het | 93.9862 | 93.7479 | 94.2256 | 83.3757 | 17124 | 1142 | 17150 | 1051 | 571 | 54.3292 | |
| gduggal-snapplat | SNP | ti | map_l125_m1_e0 | hetalt | 84.6154 | 91.6667 | 78.5714 | 78.4615 | 22 | 2 | 22 | 6 | 6 | 100.0000 | |