PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40951-41000 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | * | 33.3333 | 23.0769 | 60.0000 | 66.6667 | 3 | 10 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | het | 36.3636 | 28.5714 | 50.0000 | 63.6364 | 2 | 5 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapplat | INDEL | I6_15 | tech_badpromoters | homalt | 50.0000 | 33.3333 | 100.0000 | 66.6667 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | * | * | 99.0030 | 98.6815 | 99.3266 | 26.8746 | 3014360 | 40274 | 3015151 | 20442 | 2819 | 13.7902 | |
| gduggal-snapplat | SNP | * | * | het | 98.7739 | 98.5851 | 98.9633 | 30.9812 | 1847092 | 26509 | 1848114 | 19360 | 2442 | 12.6136 | |
| gduggal-snapplat | SNP | * | * | hetalt | 96.2665 | 94.8335 | 97.7435 | 52.4025 | 826 | 45 | 823 | 19 | 18 | 94.7368 | |
| gduggal-snapplat | SNP | * | * | homalt | 99.3703 | 98.8374 | 99.9089 | 19.1469 | 1166442 | 13720 | 1166214 | 1063 | 359 | 33.7723 | |
| gduggal-snapplat | SNP | * | HG002complexvar | * | 97.9967 | 97.4708 | 98.5284 | 22.9400 | 735305 | 19080 | 736073 | 10994 | 1866 | 16.9729 | |
| gduggal-snapplat | SNP | * | HG002complexvar | het | 97.4346 | 97.1046 | 97.7668 | 23.9217 | 452022 | 13478 | 453020 | 10348 | 1516 | 14.6502 | |
| gduggal-snapplat | SNP | * | HG002complexvar | hetalt | 91.0113 | 86.7742 | 95.6835 | 42.9158 | 269 | 41 | 266 | 12 | 12 | 100.0000 | |
| gduggal-snapplat | SNP | * | HG002complexvar | homalt | 98.9173 | 98.0729 | 99.7763 | 21.2516 | 283014 | 5561 | 282787 | 634 | 338 | 53.3123 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | * | 83.9950 | 90.1789 | 78.6048 | 56.2142 | 23286 | 2536 | 23381 | 6364 | 715 | 11.2351 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | het | 76.3438 | 87.3819 | 67.7816 | 62.0964 | 12389 | 1789 | 12564 | 5972 | 438 | 7.3342 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | hetalt | 97.1488 | 94.8956 | 99.5116 | 22.8814 | 818 | 44 | 815 | 4 | 4 | 100.0000 | |
| gduggal-snapplat | SNP | * | HG002compoundhet | homalt | 94.8523 | 93.4799 | 96.2656 | 42.1750 | 10079 | 703 | 10002 | 388 | 273 | 70.3608 | |
| gduggal-snapplat | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | func_cds | * | 99.4703 | 99.3223 | 99.6187 | 31.7106 | 18027 | 123 | 18027 | 69 | 5 | 7.2464 | |
| gduggal-snapplat | SNP | * | func_cds | het | 99.3276 | 99.2653 | 99.3900 | 36.7079 | 11079 | 82 | 11079 | 68 | 4 | 5.8824 | |
| gduggal-snapplat | SNP | * | func_cds | hetalt | 94.7368 | 90.0000 | 100.0000 | 47.0588 | 9 | 1 | 9 | 0 | 0 | ||
| gduggal-snapplat | SNP | * | func_cds | homalt | 99.7054 | 99.4269 | 99.9856 | 21.7587 | 6939 | 40 | 6939 | 1 | 1 | 100.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 84.5678 | 88.4131 | 81.0431 | 88.8392 | 4212 | 552 | 4211 | 985 | 36 | 3.6548 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 79.6423 | 87.1021 | 73.3594 | 90.7618 | 2627 | 389 | 2627 | 954 | 23 | 2.4109 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 94.2325 | 90.6751 | 98.0805 | 79.1908 | 1585 | 163 | 1584 | 31 | 13 | 41.9355 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 87.5770 | 82.0514 | 93.9006 | 76.3684 | 45646 | 9985 | 45754 | 2972 | 322 | 10.8345 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 86.1713 | 81.5015 | 91.4087 | 79.3482 | 28867 | 6552 | 28940 | 2720 | 211 | 7.7574 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 76.9231 | 83.3333 | 86.3636 | 10 | 3 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 90.1136 | 83.0190 | 98.5341 | 67.6995 | 16769 | 3430 | 16804 | 250 | 110 | 44.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 87.1882 | 84.7031 | 89.8235 | 87.4240 | 38711 | 6991 | 38837 | 4400 | 387 | 8.7955 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 84.7824 | 84.1112 | 85.4645 | 89.6399 | 24150 | 4562 | 24242 | 4123 | 282 | 6.8397 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.6667 | 86.6667 | 86.6667 | 95.8564 | 13 | 2 | 13 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 91.5045 | 85.7025 | 98.1490 | 78.6703 | 14548 | 2427 | 14582 | 275 | 104 | 37.8182 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 90.3941 | 93.8999 | 87.1407 | 79.9532 | 4033 | 262 | 4032 | 595 | 11 | 1.8487 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 86.6794 | 93.1497 | 81.0496 | 83.5702 | 2502 | 184 | 2502 | 585 | 8 | 1.3675 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.2061 | 95.1523 | 99.3506 | 63.9597 | 1531 | 78 | 1530 | 10 | 3 | 30.0000 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.5127 | 86.3519 | 84.6897 | 75.2304 | 5340 | 844 | 5349 | 967 | 23 | 2.3785 | |
| gduggal-snapplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 81.9075 | 85.8815 | 78.2851 | 78.2609 | 3376 | 555 | 3378 | 937 | 16 | 1.7076 | |