PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40451-40500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1995 | 98.5461 | 99.8616 | 38.6640 | 2169 | 32 | 2164 | 3 | 2 | 66.6667 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 90.8579 | 97.8289 | 84.8143 | 63.2556 | 10499 | 233 | 10461 | 1873 | 64 | 3.4170 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 86.9141 | 97.9686 | 78.1013 | 68.8863 | 6607 | 137 | 6598 | 1850 | 55 | 2.9730 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.5046 | 97.6173 | 99.4081 | 39.4232 | 3892 | 95 | 3863 | 23 | 9 | 39.1304 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 32.7542 | 70.2970 | 21.3514 | 93.1022 | 71 | 30 | 79 | 291 | 7 | 2.4055 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 29.4957 | 83.3333 | 17.9191 | 92.6664 | 55 | 11 | 62 | 284 | 5 | 1.7606 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 55.5669 | 45.7143 | 70.8333 | 96.2848 | 16 | 19 | 17 | 7 | 2 | 28.5714 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.5798 | 98.0799 | 95.1250 | 45.1378 | 3831 | 75 | 3805 | 195 | 3 | 1.5385 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.2200 | 98.0630 | 92.5373 | 51.0491 | 2430 | 48 | 2418 | 195 | 3 | 1.5385 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.0806 | 98.1780 | 100.0000 | 28.9811 | 1401 | 26 | 1387 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 75.0000 | 25.0000 | 97.0516 | 6 | 2 | 3 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 28.5714 | 66.6667 | 18.1818 | 96.6361 | 4 | 2 | 2 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | * | 92.9211 | 95.6915 | 90.3065 | 76.7821 | 20833 | 938 | 20654 | 2217 | 198 | 8.9310 | |
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | het | 90.6971 | 96.0523 | 85.9075 | 80.2123 | 13431 | 552 | 13338 | 2188 | 175 | 7.9982 | |
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l100_m0_e0 | homalt | 97.3605 | 95.2148 | 99.6052 | 63.3538 | 7402 | 372 | 7316 | 29 | 23 | 79.3103 | |
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | * | 95.0911 | 96.2467 | 93.9630 | 72.8656 | 46132 | 1799 | 45682 | 2935 | 278 | 9.4719 | |
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | het | 93.5196 | 96.3997 | 90.8067 | 76.8858 | 28864 | 1078 | 28615 | 2897 | 247 | 8.5261 | |
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 29 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | homalt | 97.9288 | 96.1470 | 99.7778 | 60.0714 | 17268 | 692 | 17067 | 38 | 31 | 81.5789 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | * | 95.1595 | 96.2807 | 94.0641 | 74.3570 | 47140 | 1821 | 46684 | 2946 | 281 | 9.5384 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | het | 93.6224 | 96.4339 | 90.9701 | 78.1195 | 29530 | 1092 | 29276 | 2906 | 248 | 8.5341 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | homalt | 97.9436 | 96.1822 | 99.7707 | 62.4459 | 17610 | 699 | 17408 | 40 | 33 | 82.5000 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | * | 95.1804 | 96.2979 | 94.0886 | 74.3752 | 47653 | 1832 | 47192 | 2965 | 284 | 9.5784 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | het | 93.6568 | 96.4632 | 91.0091 | 78.1383 | 29865 | 1095 | 29608 | 2925 | 251 | 8.5812 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | homalt | 97.9449 | 96.1825 | 99.7730 | 62.4406 | 17788 | 706 | 17584 | 40 | 33 | 82.5000 | |
| gduggal-snapvard | SNP | ti | map_l125_m0_e0 | * | 90.9915 | 95.2045 | 87.1355 | 81.6073 | 12150 | 612 | 12043 | 1778 | 144 | 8.0990 | |
| gduggal-snapvard | SNP | ti | map_l125_m0_e0 | het | 88.1418 | 95.6916 | 81.6961 | 84.2040 | 7907 | 356 | 7851 | 1759 | 129 | 7.3337 | |
| gduggal-snapvard | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | map_l125_m0_e0 | homalt | 96.9471 | 94.4778 | 99.5488 | 70.5648 | 4243 | 248 | 4192 | 19 | 15 | 78.9474 | |
| gduggal-snapvard | SNP | ti | map_l125_m1_e0 | * | 93.7547 | 96.2264 | 91.4068 | 77.7724 | 28228 | 1107 | 27965 | 2629 | 225 | 8.5584 | |