PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40351-40400 / 86044 show all | |||||||||||||||
| gduggal-snapvard | SNP | * | segdup | homalt | 98.5503 | 97.6171 | 99.5016 | 88.8814 | 10487 | 256 | 10381 | 52 | 50 | 96.1538 | |
| gduggal-snapvard | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | * | tech_badpromoters | * | 88.3476 | 84.7134 | 92.3077 | 52.4917 | 133 | 24 | 132 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | het | 86.4516 | 87.0130 | 85.8974 | 57.3770 | 67 | 10 | 67 | 11 | 2 | 18.1818 | |
| gduggal-snapvard | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | * | tech_badpromoters | homalt | 90.4110 | 82.5000 | 100.0000 | 44.9153 | 66 | 14 | 65 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | * | * | 99.1158 | 98.9272 | 99.3052 | 22.3384 | 2063143 | 22374 | 2054412 | 14373 | 2372 | 16.5032 | |
| gduggal-snapvard | SNP | ti | * | het | 98.9307 | 98.9471 | 98.9142 | 25.7701 | 1268399 | 13497 | 1263991 | 13875 | 2046 | 14.7459 | |
| gduggal-snapvard | SNP | ti | * | hetalt | 0.0000 | 1.0309 | 0.0000 | 0.0000 | 6 | 576 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | * | homalt | 99.4493 | 98.9663 | 99.9370 | 16.0694 | 794738 | 8301 | 790421 | 498 | 326 | 65.4618 | |
| gduggal-snapvard | SNP | ti | HG002complexvar | * | 97.8937 | 96.7473 | 99.0676 | 19.7850 | 491898 | 16538 | 483039 | 4546 | 1783 | 39.2213 | |
| gduggal-snapvard | SNP | ti | HG002complexvar | het | 97.7415 | 96.8929 | 98.6052 | 20.9330 | 304985 | 9780 | 300448 | 4250 | 1602 | 37.6941 | |
| gduggal-snapvard | SNP | ti | HG002complexvar | hetalt | 0.0000 | 2.8986 | 0.0000 | 0.0000 | 6 | 201 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | HG002complexvar | homalt | 98.1979 | 96.6107 | 99.8382 | 17.7966 | 186907 | 6557 | 182591 | 296 | 181 | 61.1486 | |
| gduggal-snapvard | SNP | ti | HG002compoundhet | * | 79.9822 | 79.9565 | 80.0079 | 49.1293 | 13974 | 3503 | 14163 | 3539 | 1489 | 42.0740 | |
| gduggal-snapvard | SNP | ti | HG002compoundhet | het | 77.4625 | 83.1755 | 72.4839 | 53.3720 | 7905 | 1599 | 9096 | 3453 | 1426 | 41.2974 | |
| gduggal-snapvard | SNP | ti | HG002compoundhet | hetalt | 0.0000 | 1.0363 | 0.0000 | 0.0000 | 6 | 573 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | HG002compoundhet | homalt | 89.4254 | 81.9989 | 98.3311 | 34.6481 | 6063 | 1331 | 5067 | 86 | 63 | 73.2558 | |
| gduggal-snapvard | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9986 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9896 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | func_cds | * | 99.4321 | 99.1151 | 99.7511 | 27.3375 | 13665 | 122 | 13628 | 34 | 14 | 41.1765 | |
| gduggal-snapvard | SNP | ti | func_cds | het | 99.3512 | 99.0945 | 99.6092 | 31.0131 | 8427 | 77 | 8411 | 33 | 13 | 39.3939 | |
| gduggal-snapvard | SNP | ti | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | func_cds | homalt | 99.6385 | 99.2986 | 99.9808 | 20.4816 | 5238 | 37 | 5217 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.5113 | 95.2894 | 72.7551 | 82.9109 | 3095 | 153 | 3095 | 1159 | 30 | 2.5884 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 75.9223 | 95.2075 | 63.1339 | 85.1688 | 1927 | 97 | 1942 | 1134 | 22 | 1.9400 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.6357 | 95.4248 | 97.8778 | 71.6350 | 1168 | 56 | 1153 | 25 | 8 | 32.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 91.8181 | 97.0493 | 87.1220 | 66.7143 | 27134 | 825 | 26966 | 3986 | 179 | 4.4907 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 88.6909 | 97.1990 | 81.5523 | 71.2536 | 17351 | 500 | 17263 | 3905 | 147 | 3.7644 | |
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 97.9882 | 96.8323 | 99.1721 | 49.4419 | 9782 | 320 | 9703 | 81 | 32 | 39.5062 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.9733 | 91.1887 | 83.1303 | 79.6742 | 28398 | 2744 | 28182 | 5719 | 224 | 3.9168 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 82.7666 | 91.0205 | 75.8851 | 82.6190 | 17820 | 1758 | 17704 | 5626 | 180 | 3.1994 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 8.3333 | 0.0000 | 0.0000 | 1 | 11 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.1902 | 91.5599 | 99.1202 | 67.5348 | 10577 | 975 | 10478 | 93 | 44 | 47.3118 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 93.2273 | 96.9246 | 89.8017 | 74.7396 | 2868 | 91 | 2853 | 324 | 8 | 2.4691 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 90.2657 | 96.6139 | 84.7002 | 79.3155 | 1769 | 62 | 1766 | 319 | 5 | 1.5674 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4743 | 97.4291 | 99.5421 | 56.2675 | 1099 | 29 | 1087 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||