PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39401-39450 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7532 | 13 | 0 | 15 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | * | 79.8265 | 97.6608 | 67.5000 | 94.8077 | 167 | 4 | 216 | 104 | 17 | 16.3462 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | het | 73.8070 | 99.0991 | 58.8000 | 95.2866 | 110 | 1 | 147 | 103 | 16 | 15.5340 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 96.6161 | 94.7368 | 98.5714 | 91.8510 | 54 | 3 | 69 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | * | 80.1166 | 97.8261 | 67.8363 | 95.0015 | 180 | 4 | 232 | 110 | 18 | 16.3636 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | het | 74.0028 | 99.1736 | 59.0226 | 95.4854 | 120 | 1 | 157 | 109 | 17 | 15.5963 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 96.8071 | 95.0000 | 98.6842 | 92.0000 | 57 | 3 | 75 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | * | 80.0482 | 97.8378 | 67.7326 | 95.1053 | 181 | 4 | 233 | 111 | 18 | 16.2162 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | het | 73.8307 | 99.1803 | 58.8015 | 95.5890 | 121 | 1 | 157 | 110 | 17 | 15.4545 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 96.8153 | 95.0000 | 98.7013 | 92.1026 | 57 | 3 | 76 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | * | 89.9255 | 93.9643 | 86.2197 | 83.0558 | 3316 | 213 | 3729 | 596 | 269 | 45.1342 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | het | 89.3607 | 98.0237 | 82.1046 | 85.3259 | 2232 | 45 | 2606 | 568 | 243 | 42.7817 | |
| gduggal-snapvard | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 47.6190 | 0.0000 | 0.0000 | 40 | 44 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_siren | homalt | 93.2963 | 89.3836 | 97.5673 | 70.4493 | 1044 | 124 | 1123 | 28 | 26 | 92.8571 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | * | 90.1625 | 92.8377 | 87.6372 | 94.9594 | 1024 | 79 | 1198 | 169 | 138 | 81.6568 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | het | 90.8046 | 97.6879 | 84.8276 | 95.5414 | 676 | 16 | 861 | 154 | 123 | 79.8701 | |
| gduggal-snapvard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 71.1538 | 0.0000 | 0.0000 | 37 | 15 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdup | homalt | 90.9566 | 86.6295 | 95.7386 | 91.9173 | 311 | 48 | 337 | 15 | 15 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9955 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9947 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | * | 63.5213 | 63.1579 | 63.8889 | 58.1395 | 12 | 7 | 23 | 13 | 10 | 76.9231 | |
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | het | 70.7447 | 87.5000 | 59.3750 | 58.9744 | 7 | 1 | 19 | 13 | 10 | 76.9231 | |
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | tech_badpromoters | homalt | 61.5385 | 44.4444 | 100.0000 | 50.0000 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | * | * | 65.0191 | 61.1567 | 69.4022 | 48.8917 | 15957 | 10135 | 16034 | 7069 | 5706 | 80.7186 | |
| gduggal-snapvard | INDEL | D6_15 | * | het | 75.6496 | 85.7660 | 67.6679 | 49.6050 | 9942 | 1650 | 14418 | 6889 | 5530 | 80.2729 | |
| gduggal-snapvard | INDEL | D6_15 | * | hetalt | 0.0000 | 50.2569 | 0.0000 | 0.0000 | 4108 | 4066 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | * | homalt | 45.1606 | 30.1454 | 89.9777 | 38.5773 | 1907 | 4419 | 1616 | 180 | 176 | 97.7778 | |
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | * | 66.6908 | 61.3353 | 73.0708 | 52.3301 | 3252 | 2050 | 3229 | 1190 | 878 | 73.7815 | |
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | het | 73.6293 | 75.8333 | 71.5498 | 53.1509 | 2366 | 754 | 2867 | 1140 | 832 | 72.9825 | |
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 48.8648 | 0.0000 | 0.0000 | 495 | 518 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | HG002complexvar | homalt | 48.4509 | 33.4474 | 87.8641 | 42.5384 | 391 | 778 | 362 | 50 | 46 | 92.0000 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | * | 59.7955 | 51.4782 | 71.3183 | 33.2912 | 4649 | 4382 | 4896 | 1969 | 1719 | 87.3032 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | het | 67.0812 | 63.3178 | 71.3203 | 33.1905 | 542 | 314 | 4894 | 1968 | 1718 | 87.2967 | |
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 50.3006 | 0.0000 | 0.0000 | 4100 | 4051 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | HG002compoundhet | homalt | 40.5797 | 29.1667 | 66.6667 | 85.0000 | 7 | 17 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.8106 | 0 | 1 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 50.0000 | 99.7998 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D6_15 | func_cds | * | 67.7933 | 60.4651 | 77.1429 | 50.7042 | 26 | 17 | 27 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | het | 79.1035 | 82.7586 | 75.7576 | 50.7463 | 24 | 5 | 25 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D6_15 | func_cds | homalt | 28.5714 | 16.6667 | 100.0000 | 50.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 34.3818 | 27.5134 | 45.8204 | 41.0718 | 1081 | 2848 | 1184 | 1400 | 1153 | 82.3571 | |