PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39351-39400 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | het | 84.5932 | 97.4619 | 74.7264 | 88.6901 | 576 | 15 | 751 | 254 | 66 | 25.9843 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 78.5714 | 0.0000 | 0.0000 | 11 | 3 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | homalt | 94.0528 | 90.3101 | 98.1191 | 79.0407 | 233 | 25 | 313 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | * | 88.9711 | 94.4264 | 84.1118 | 85.2613 | 1745 | 103 | 2197 | 415 | 169 | 40.7229 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | het | 87.4983 | 97.7667 | 79.1818 | 87.0966 | 1182 | 27 | 1529 | 402 | 157 | 39.0547 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 53.1915 | 0.0000 | 0.0000 | 25 | 22 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m1_e0 | homalt | 94.3471 | 90.8784 | 98.0910 | 75.2992 | 538 | 54 | 668 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | * | 89.1114 | 94.4125 | 84.3738 | 85.7309 | 1808 | 107 | 2284 | 423 | 173 | 40.8983 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | het | 87.6928 | 97.6911 | 79.5511 | 87.5070 | 1227 | 29 | 1595 | 410 | 161 | 39.2683 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 52.0833 | 0.0000 | 0.0000 | 25 | 23 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e0 | homalt | 94.4381 | 90.9984 | 98.1481 | 75.9754 | 556 | 55 | 689 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | * | 88.9679 | 94.1723 | 84.3087 | 85.8664 | 1826 | 113 | 2305 | 429 | 173 | 40.3263 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | het | 87.6002 | 97.6341 | 79.4365 | 87.6420 | 1238 | 30 | 1607 | 416 | 161 | 38.7019 | |
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 49.0196 | 0.0000 | 0.0000 | 25 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m2_e1 | homalt | 94.3455 | 90.8065 | 98.1716 | 76.0928 | 563 | 57 | 698 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | * | 85.0206 | 95.5645 | 76.5721 | 89.6278 | 474 | 22 | 621 | 190 | 41 | 21.5789 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | het | 81.8658 | 97.6812 | 70.4581 | 90.5282 | 337 | 8 | 446 | 187 | 38 | 20.3209 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m0_e0 | homalt | 94.2676 | 90.5405 | 98.3146 | 84.3310 | 134 | 14 | 175 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | * | 87.8220 | 95.5882 | 81.2230 | 87.7784 | 1040 | 48 | 1315 | 304 | 98 | 32.2368 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | het | 85.4186 | 98.2094 | 75.5757 | 89.1583 | 713 | 13 | 919 | 297 | 91 | 30.6397 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 69.2308 | 0.0000 | 0.0000 | 9 | 4 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 94.5554 | 91.1175 | 98.2630 | 80.1576 | 318 | 31 | 396 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | * | 88.0937 | 95.6255 | 81.6617 | 88.2856 | 1093 | 50 | 1376 | 309 | 102 | 33.0097 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | het | 85.7414 | 98.1675 | 76.1076 | 89.6257 | 750 | 14 | 962 | 302 | 95 | 31.4570 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 94.7867 | 91.4835 | 98.3373 | 80.8636 | 333 | 31 | 414 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | * | 88.0989 | 95.5920 | 81.6951 | 88.4146 | 1106 | 51 | 1388 | 311 | 102 | 32.7974 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | het | 85.7424 | 98.1818 | 76.1006 | 89.7593 | 756 | 14 | 968 | 304 | 95 | 31.2500 | |
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 66.6667 | 0.0000 | 0.0000 | 10 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 94.7515 | 91.3978 | 98.3607 | 80.9715 | 340 | 32 | 420 | 7 | 7 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | * | 83.0230 | 95.8478 | 73.2252 | 92.0420 | 277 | 12 | 361 | 132 | 21 | 15.9091 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | het | 79.3587 | 98.0198 | 66.6667 | 92.5863 | 198 | 4 | 262 | 131 | 20 | 15.2672 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m0_e0 | homalt | 94.6075 | 90.5882 | 99.0000 | 88.8143 | 77 | 8 | 99 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | * | 86.5802 | 95.6764 | 79.0634 | 89.6914 | 686 | 31 | 861 | 228 | 53 | 23.2456 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | het | 83.7248 | 98.3402 | 72.8916 | 90.7572 | 474 | 8 | 605 | 225 | 50 | 22.2222 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.6446 | 90.7895 | 98.8417 | 83.6490 | 207 | 21 | 256 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | * | 87.0891 | 95.8060 | 79.8261 | 90.0965 | 731 | 32 | 918 | 232 | 55 | 23.7069 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | het | 84.3060 | 98.2490 | 73.8286 | 91.1437 | 505 | 9 | 646 | 229 | 52 | 22.7074 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 71.4286 | 0.0000 | 0.0000 | 5 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9644 | 91.3223 | 98.9091 | 84.1224 | 221 | 21 | 272 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | * | 86.9569 | 95.6298 | 79.7263 | 90.1392 | 744 | 34 | 932 | 237 | 56 | 23.6287 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | het | 84.1666 | 98.0843 | 73.7079 | 91.1768 | 512 | 10 | 656 | 234 | 53 | 22.6496 | |
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 75.0000 | 0.0000 | 0.0000 | 6 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8670 | 91.1290 | 98.9247 | 84.2195 | 226 | 22 | 276 | 3 | 3 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | * | 74.2857 | 100.0000 | 59.0909 | 96.7105 | 46 | 0 | 65 | 45 | 8 | 17.7778 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | het | 68.9655 | 100.0000 | 52.6316 | 96.7037 | 33 | 0 | 50 | 45 | 8 | 17.7778 | |
| gduggal-snapvard | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||