PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39301-39350 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 30.0306 | 17.9045 | 93.0510 | 37.7282 | 851 | 3902 | 857 | 64 | 62 | 96.8750 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 61.1245 | 61.5551 | 60.6998 | 48.1943 | 13696 | 8554 | 19966 | 12927 | 11157 | 86.3077 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 71.1558 | 89.0067 | 59.2690 | 47.6573 | 7473 | 923 | 18665 | 12827 | 11064 | 86.2556 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 60.7121 | 0.0000 | 0.0000 | 4962 | 3211 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 35.8293 | 22.1968 | 92.8622 | 57.9026 | 1261 | 4420 | 1301 | 100 | 93 | 93.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 64.0892 | 66.0415 | 62.2490 | 58.2196 | 20741 | 10665 | 29849 | 18102 | 14698 | 81.1954 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 72.2778 | 90.5780 | 60.1295 | 57.9997 | 12459 | 1296 | 27033 | 17925 | 14535 | 81.0879 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 60.0151 | 0.0000 | 0.0000 | 5576 | 3715 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 48.1662 | 32.3684 | 94.0862 | 61.2657 | 2706 | 5654 | 2816 | 177 | 163 | 92.0904 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 70.9708 | 71.4018 | 70.5450 | 38.3153 | 17522 | 7018 | 22276 | 9301 | 8410 | 90.4204 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 78.0403 | 92.7260 | 67.3704 | 39.0451 | 9650 | 757 | 18923 | 9165 | 8275 | 90.2891 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 66.8748 | 0.0000 | 0.0000 | 4605 | 2281 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 61.3722 | 45.0807 | 96.1020 | 31.7355 | 3267 | 3980 | 3353 | 136 | 135 | 99.2647 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 26.4385 | 22.6686 | 31.7125 | 37.5578 | 158 | 539 | 300 | 646 | 514 | 79.5666 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.8106 | 46.6667 | 31.7797 | 37.1505 | 63 | 72 | 300 | 644 | 513 | 79.6584 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 19.3483 | 0.0000 | 0.0000 | 95 | 396 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 84.6154 | 0 | 71 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.0746 | 98.4739 | 97.6786 | 54.4653 | 24972 | 387 | 25036 | 595 | 449 | 75.4622 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.8939 | 99.4854 | 96.3524 | 57.0732 | 14694 | 76 | 15268 | 578 | 432 | 74.7405 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 92.9440 | 0.0000 | 0.0000 | 382 | 29 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.5107 | 97.2293 | 99.8263 | 49.4968 | 9896 | 282 | 9768 | 17 | 17 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 75.0000 | 99.9757 | 0 | 1 | 21 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 74.0741 | 99.9731 | 0 | 0 | 20 | 7 | 3 | 42.8571 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9933 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 71.3186 | 75.9474 | 67.2215 | 47.6957 | 9018 | 2856 | 12237 | 5967 | 4608 | 77.2247 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 76.5644 | 95.3537 | 63.9609 | 48.2339 | 6403 | 312 | 10480 | 5905 | 4553 | 77.1041 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 62.1567 | 0.0000 | 0.0000 | 928 | 565 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 62.3368 | 46.0175 | 96.5915 | 42.2906 | 1687 | 1979 | 1757 | 62 | 55 | 88.7097 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 35.5104 | 33.6851 | 37.5449 | 56.5557 | 415 | 817 | 627 | 1043 | 747 | 71.6203 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 46.6061 | 61.8182 | 37.4023 | 55.7713 | 238 | 147 | 622 | 1041 | 745 | 71.5658 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 26.6154 | 0.0000 | 0.0000 | 173 | 477 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 3.9487 | 2.0305 | 71.4286 | 91.6667 | 4 | 193 | 5 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 77.9762 | 81.6286 | 74.6367 | 40.5656 | 3328 | 749 | 4314 | 1466 | 1261 | 86.0164 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 82.0492 | 96.8053 | 71.1966 | 41.3611 | 2212 | 73 | 3552 | 1437 | 1234 | 85.8733 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 76.6234 | 0.0000 | 0.0000 | 354 | 108 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 71.8529 | 57.2932 | 96.3338 | 35.0041 | 762 | 568 | 762 | 29 | 27 | 93.1034 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 40.0000 | 40.0000 | 40.0000 | 55.8824 | 30 | 45 | 42 | 63 | 42 | 66.6667 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 54.6746 | 84.6154 | 40.3846 | 55.1724 | 11 | 2 | 42 | 62 | 42 | 67.7419 | |
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 38.7755 | 0.0000 | 0.0000 | 19 | 30 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 13 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | D1_5 | map_l100_m0_e0 | * | 87.0777 | 95.0174 | 80.3625 | 87.2790 | 820 | 43 | 1064 | 260 | 71 | 27.3077 | |