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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
39201-39250 / 86044 show all
gduggal-snapvardINDELI1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
74.0214
58.9765
99.3707
59.0788
20861451124747971
89.8734
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
64.3466
65.7191
63.0303
66.4559
1056555111334178256132
78.3642
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
71.3469
89.3925
59.3632
66.7339
57396811135577736089
78.3353
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
50.9584
0.0000
0.0000
30042891000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
64.7166
48.4446
97.4485
63.6006
1822193919865243
82.6923
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
71.2817
75.3968
67.5926
74.1362
475155511245114
46.5306
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
73.8894
92.7746
61.3924
75.7947
32125388244113
46.3115
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
36.9048
0.0000
0.0000
3153000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
75.9259
61.5000
99.1935
60.2564
1237712311
100.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
01000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
01000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
75.7559
79.7506
72.1424
75.3616
10872761155446264
59.1928
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
78.8022
96.7658
66.4639
76.6264
74825874441259
58.7302
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
38.3929
0.0000
0.0000
4369000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
75.9688
61.9247
98.2517
67.2018
29618228155
100.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
77.6372
81.0471
74.5027
77.6881
774181824282193
68.4397
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
81.0483
98.1785
69.0078
78.8892
53910619278189
67.9856
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
36.6667
0.0000
0.0000
2238000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
75.6451
61.5607
98.0861
70.4802
21313320544
100.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
38.9035
36.0279
42.2780
67.7158
361641438598312
52.1739
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
52.7646
70.1389
42.2890
66.9445
20286436595310
52.1008
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
24.6835
0.0000
0.0000
156476000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
6.7039
3.6585
40.0000
94.4444
379232
66.6667
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
57.2013
57.5771
56.8303
44.8249
39782931605345984136
89.9522
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
66.7149
82.5790
55.9638
44.4510
1332281581845784118
89.9519
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
54.7020
0.0000
0.0000
25422105000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
27.3019
16.0247
92.1569
56.7063
1045452352018
90.0000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
59.5875
61.0924
58.1549
41.9454
36242308562340463831
94.6861
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
68.4924
85.2853
57.2248
41.5985
1136196539040293815
94.6885
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
59.2455
0.0000
0.0000
23871642000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
29.7335
17.6883
93.2000
52.5617
1014702331716
94.1176
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
60.1668
61.4104
58.9725
57.4072
51643245728950714386
86.4918
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
69.0793
87.2712
57.1635
56.5737
2146313673550474364
86.4672
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
54.1073
0.0000
0.0000
25822190000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
53.4023
37.0119
95.8478
69.3856
4367425542422
91.6667
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
64.3466
65.7191
63.0303
66.4559
1056555111334178256132
78.3642
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
71.3469
89.3925
59.3632
66.7339
57396811135577736089
78.3353
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
50.9584
0.0000
0.0000
30042891000
gduggal-snapvardINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
64.7166
48.4446
97.4485
63.6006
1822193919865243
82.6923
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
68.0107
68.2833
67.7403
40.7190
391418181093652084870
93.5100
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
75.4653
90.5356
64.6962
41.2162
1234129945651604823
93.4690
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
62.8647
0.0000
0.0000
23921413000
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
66.8725
51.0638
96.8586
35.5002
28827614804847
97.9167
gduggal-snapvardINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
23.0092
16.5049
37.9747
64.0909
34172304932
65.3061