PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39151-39200 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 100.0000 | 92.8571 | 0 | 1 | 3 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | * | 4.4800 | 2.3256 | 60.8696 | 78.5047 | 2 | 84 | 28 | 18 | 12 | 66.6667 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | het | 7.6607 | 4.0816 | 62.2222 | 78.3654 | 2 | 47 | 28 | 17 | 11 | 64.7059 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | homalt | 0.0000 | 0.0000 | 83.3333 | 0 | 21 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-snapvard | INDEL | I16_PLUS | segdup | * | 7.7994 | 4.2553 | 46.6667 | 93.6170 | 2 | 45 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | het | 14.1414 | 8.3333 | 46.6667 | 93.3628 | 2 | 22 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | segdup | homalt | 0.0000 | 100.0000 | 0 | 19 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 4 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 100.0000 | 50.0000 | 0 | 2 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | * | * | 88.2138 | 87.9937 | 88.4349 | 55.6066 | 132574 | 18089 | 133297 | 17432 | 13523 | 77.5757 | |
| gduggal-snapvard | INDEL | I1_5 | * | het | 89.2130 | 96.8839 | 82.6678 | 61.9450 | 76578 | 2463 | 82223 | 17239 | 13345 | 77.4117 | |
| gduggal-snapvard | INDEL | I1_5 | * | hetalt | 0.0000 | 36.5106 | 0.0000 | 0.0000 | 4087 | 7107 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | * | homalt | 92.2555 | 85.9022 | 99.6235 | 34.4127 | 51909 | 8519 | 51074 | 193 | 178 | 92.2280 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | * | 89.7354 | 89.2273 | 90.2494 | 52.3644 | 29768 | 3594 | 28665 | 3097 | 2248 | 72.5864 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | het | 90.2347 | 95.7007 | 85.3594 | 58.5913 | 17407 | 782 | 17730 | 3041 | 2197 | 72.2460 | |
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | hetalt | 0.0000 | 41.9710 | 0.0000 | 0.0000 | 724 | 1001 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | HG002complexvar | homalt | 92.5606 | 86.5333 | 99.4905 | 33.4524 | 11637 | 1811 | 10935 | 56 | 51 | 91.0714 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | * | 44.4193 | 40.7689 | 48.7878 | 63.5182 | 5037 | 7318 | 5393 | 5661 | 4783 | 84.4904 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | het | 60.6574 | 83.0588 | 47.7728 | 63.6646 | 706 | 144 | 5148 | 5628 | 4753 | 84.4527 | |
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | hetalt | 0.0000 | 36.5157 | 0.0000 | 0.0000 | 4081 | 7095 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | HG002compoundhet | homalt | 81.6095 | 75.9878 | 88.1295 | 56.7652 | 250 | 79 | 245 | 33 | 30 | 90.9091 | |
| gduggal-snapvard | INDEL | I1_5 | decoy | * | 0.0000 | 0.0000 | 99.9894 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I1_5 | decoy | het | 0.0000 | 0.0000 | 99.9880 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | I1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | func_cds | * | 92.6851 | 92.7778 | 92.5926 | 34.6021 | 167 | 13 | 175 | 14 | 11 | 78.5714 | |
| gduggal-snapvard | INDEL | I1_5 | func_cds | het | 88.3685 | 94.9153 | 82.6667 | 49.3243 | 56 | 3 | 62 | 13 | 10 | 76.9231 | |
| gduggal-snapvard | INDEL | I1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | func_cds | homalt | 96.1113 | 93.2773 | 99.1228 | 19.1489 | 111 | 8 | 113 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 49.8749 | 48.6428 | 51.1711 | 72.7940 | 896 | 946 | 1005 | 959 | 462 | 48.1752 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.5053 | 81.8731 | 47.9826 | 72.9778 | 542 | 120 | 880 | 954 | 458 | 48.0084 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 25.4181 | 0.0000 | 0.0000 | 228 | 669 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 60.8637 | 44.5230 | 96.1538 | 69.9074 | 126 | 157 | 125 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 77.1368 | 72.0532 | 82.9923 | 72.5173 | 11223 | 4353 | 45225 | 9268 | 7975 | 86.0488 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 84.6909 | 92.5107 | 78.0901 | 74.9769 | 5645 | 457 | 32751 | 9189 | 7904 | 86.0159 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 58.8176 | 0.0000 | 0.0000 | 3492 | 2445 | 0 | 0 | 0 | ||