PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38951-39000 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 80.4688 | 100.0000 | 67.3203 | 93.0926 | 1 | 0 | 206 | 100 | 19 | 19.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.0245 | 100.0000 | 57.5107 | 93.5296 | 1 | 0 | 134 | 99 | 18 | 18.1818 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 98.6301 | 91.1942 | 0 | 0 | 72 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 27.2727 | 99.8437 | 0 | 0 | 3 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 27.2727 | 99.8229 | 0 | 0 | 3 | 8 | 4 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 38.6341 | 100.0000 | 23.9420 | 83.0324 | 1 | 0 | 198 | 629 | 44 | 6.9952 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 35.0259 | 100.0000 | 21.2312 | 82.4631 | 1 | 0 | 169 | 627 | 43 | 6.8581 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 93.5484 | 90.7463 | 0 | 0 | 29 | 2 | 1 | 50.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 7.3529 | 85.3132 | 0 | 0 | 10 | 126 | 4 | 3.1746 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 7.3529 | 85.0549 | 0 | 0 | 10 | 126 | 4 | 3.1746 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 55.2239 | 100.0000 | 38.1443 | 82.3636 | 1 | 0 | 74 | 120 | 20 | 16.6667 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 49.7817 | 100.0000 | 33.1395 | 82.4847 | 1 | 0 | 57 | 115 | 16 | 13.9130 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 77.2727 | 81.3559 | 0 | 0 | 17 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 9.0909 | 81.6667 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 10.0000 | 82.7586 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 37.0370 | 95.7547 | 0 | 0 | 30 | 51 | 4 | 7.8431 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 28.5714 | 95.7755 | 0 | 0 | 20 | 50 | 4 | 8.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 90.9091 | 95.6175 | 0 | 0 | 10 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 49.0566 | 95.2861 | 0 | 0 | 78 | 81 | 9 | 11.1111 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 41.1765 | 95.4085 | 0 | 0 | 56 | 80 | 9 | 11.2500 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.4039 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 48.7654 | 95.6463 | 0 | 0 | 79 | 83 | 9 | 10.8434 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 41.0072 | 95.7686 | 0 | 0 | 57 | 82 | 9 | 10.9756 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.7248 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 48.1928 | 95.6316 | 0 | 0 | 80 | 86 | 9 | 10.4651 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 40.5594 | 95.7390 | 0 | 0 | 58 | 85 | 9 | 10.5882 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.8198 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 28.5714 | 96.1406 | 0 | 0 | 16 | 40 | 3 | 7.5000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 20.0000 | 96.0254 | 0 | 0 | 10 | 40 | 3 | 7.5000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 100.0000 | 96.8912 | 0 | 0 | 6 | 0 | 0 | ||