PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38401-38450 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 20.0000 | 77.2727 | 0 | 0 | 1 | 4 | 1 | 25.0000 | |
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 77.7778 | 0 | 0 | 0 | 4 | 1 | 25.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | * | * | 51.3896 | 100.0000 | 34.5801 | 85.2457 | 7 | 0 | 490 | 927 | 158 | 17.0442 | |
| gduggal-snapvard | INDEL | C6_15 | * | het | 48.6270 | 100.0000 | 32.1240 | 84.8018 | 7 | 0 | 425 | 898 | 137 | 15.2561 | |
| gduggal-snapvard | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 69.1489 | 89.5439 | 0 | 0 | 65 | 29 | 21 | 72.4138 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | * | 72.1017 | 100.0000 | 56.3743 | 72.3480 | 4 | 0 | 482 | 373 | 150 | 40.2145 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | het | 70.5584 | 100.0000 | 54.5098 | 71.9266 | 4 | 0 | 417 | 348 | 129 | 37.0690 | |
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 72.2222 | 75.4768 | 0 | 0 | 65 | 25 | 21 | 84.0000 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 25.1969 | 72.4113 | 0 | 0 | 96 | 285 | 78 | 27.3684 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 25.8760 | 72.2513 | 0 | 0 | 96 | 275 | 70 | 25.4545 | |
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 77.2727 | 0 | 0 | 0 | 10 | 8 | 80.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 100.0000 | 75.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | func_cds | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 100.0000 | 0.0000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 17.3913 | 86.6667 | 0 | 0 | 16 | 76 | 11 | 14.4737 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.6667 | 86.1751 | 0 | 0 | 15 | 75 | 11 | 14.6667 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.8718 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 56.8750 | 100.0000 | 39.7380 | 88.6830 | 1 | 0 | 182 | 276 | 65 | 23.5507 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 55.2980 | 100.0000 | 38.2151 | 88.1796 | 1 | 0 | 167 | 270 | 61 | 22.5926 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 71.4286 | 94.0000 | 0 | 0 | 15 | 6 | 4 | 66.6667 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 32.2896 | 88.3995 | 0 | 0 | 165 | 346 | 61 | 17.6301 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 30.5499 | 87.9361 | 0 | 0 | 150 | 341 | 58 | 17.0088 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 0.0000 | 75.0000 | 94.0299 | 0 | 0 | 15 | 5 | 3 | 60.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 11.1111 | 87.1429 | 0 | 0 | 4 | 32 | 2 | 6.2500 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 11.1111 | 87.0504 | 0 | 0 | 4 | 32 | 2 | 6.2500 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 17.5000 | 82.5708 | 0 | 0 | 14 | 66 | 6 | 9.0909 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.4557 | 81.6279 | 0 | 0 | 13 | 66 | 6 | 9.0909 | |