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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 760 761 762 763 764 765 766 767 768 ... 1720 1721 » 38151-38200 / 86044 show all
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt	0.0000	50.0000	0.0000	0.0000	1	1	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	*	41.1383	38.1818	44.5910	44.9927	504	816	845	1050	781	74.3810
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	het	52.7742	65.9483	43.9872	44.8571	306	158	823	1048	780	74.4275
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	0.0000	28.7500	0.0000	0.0000	184	456	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	12.1069	6.4815	91.6667	53.8462	14	202	22	2	1	50.0000
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	*	20.7177	14.5161	36.1702	74.1758	27	159	17	30	17	56.6667
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	het	28.0124	22.8571	36.1702	73.8889	8	27	17	30	17	56.6667
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	hetalt	0.0000	12.5828	0.0000	0.0000	19	132	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	*	58.2286	59.3301	57.1672	32.0973	248	170	335	251	223	88.8446
gduggal-snapvard	INDEL	I6_15	lowcmp_SimpleRepeat_triTR_11to50	het	66.7314	81.9672	56.2718	32.0710	100	22	323	251	223	88.8446
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	71.3852	85.9375	61.0476	58.4323	495	81	641	409	297	72.6161
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	hetalt	0.0000	45.4545	0.0000	0.0000	25	30	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	34.9312	22.1925	82.0000	62.4060	83	291	41	9	9	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	62.0379	61.0660	63.0412	57.2267	527	336	597	350	266	76.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	73.1549	89.1170	62.0422	57.0748	434	53	559	342	258	75.4386
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	hetalt	0.0000	42.4242	0.0000	0.0000	14	19	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	36.0211	23.0321	82.6087	60.0000	79	264	38	8	8	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	*	34.1360	27.5399	44.8870	36.7812	759	1997	834	1024	846	82.6172
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	het	49.3741	54.9918	44.7978	36.5595	336	275	831	1024	846	82.6172
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	hetalt	0.0000	23.8290	0.0000	0.0000	407	1301	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged	homalt	7.0640	3.6613	100.0000	80.0000	16	421	3	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	2	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	1	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged	homalt		0.0000	0.0000	0.0000	0	1	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	*	55.8292	50.1922	62.8926	42.4297	6919	6866	6849	4041	3720	92.0564
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	69.1351	77.4877	62.4080	42.2541	2998	871	6702	4037	3716	92.0486
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	hetalt	0.0000	52.0388	0.0000	0.0000	3701	3411	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	14.5215	7.8459	97.3510	52.6646	220	2584	147	4	4	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	60.5607	55.5947	66.5009	43.6531	6161	4921	6019	3032	2878	94.9208
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	72.8639	81.3378	65.9890	43.5053	2663	611	5875	3028	2874	94.9141
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	0.0000	60.5737	0.0000	0.0000	3294	2144	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	15.8160	8.6076	97.2973	51.3158	204	2166	144	4	4	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	56.1720	50.7947	62.8225	45.1920	7510	7275	7523	4452	4009	90.0494
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	69.4728	78.5200	62.2951	44.9448	3491	955	7334	4439	3996	90.0203
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	0.0000	51.8121	0.0000	0.0000	3717	3457	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	17.3176	9.5419	93.5644	56.5591	302	2863	189	13	13	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	55.1228	49.5784	62.0635	51.0444	8761	8910	8975	5486	4728	86.1830
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	67.5308	74.8546	61.5124	50.8317	4376	1470	8728	5461	4703	86.1198
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	0.0000	49.7829	0.0000	0.0000	4012	4047	0	0	0
gduggal-snapvard	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	17.8608	9.9044	90.8088	60.0587	373	3393	247	25	25	100.0000
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	*	59.9212	54.8636	66.0058	31.4666	5189	4269	5194	2675	2487	92.9720
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	het	71.5901	79.0706	65.4026	31.3787	2161	572	5036	2664	2476	92.9429
gduggal-snapvard	INDEL	D6_15	lowcmp_SimpleRepeat_diTR_11to50	hetalt	0.0000	59.5348	0.0000	0.0000	2841	1931	0	0	0

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