PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38051-38100 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | * | 68.3012 | 68.1818 | 68.4211 | 53.6585 | 15 | 7 | 13 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | het | 66.6667 | 100.0000 | 50.0000 | 55.5556 | 8 | 0 | 6 | 6 | 5 | 83.3333 | |
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | tech_badpromoters | homalt | 70.0000 | 53.8462 | 100.0000 | 50.0000 | 7 | 6 | 7 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | * | * | 50.7754 | 45.6827 | 57.1459 | 41.2412 | 11338 | 13481 | 13483 | 10111 | 8109 | 80.1998 | |
| gduggal-snapvard | INDEL | I6_15 | * | het | 64.9859 | 82.1571 | 53.7516 | 42.4853 | 8242 | 1790 | 11591 | 9973 | 7974 | 79.9559 | |
| gduggal-snapvard | INDEL | I6_15 | * | hetalt | 0.0000 | 15.6042 | 0.0000 | 0.0000 | 1334 | 7215 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | * | homalt | 43.3535 | 28.2462 | 93.2020 | 23.7129 | 1762 | 4476 | 1892 | 138 | 135 | 97.8261 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | * | 55.8350 | 49.5825 | 63.8921 | 47.3893 | 2375 | 2415 | 2794 | 1579 | 1240 | 78.5307 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | het | 67.8635 | 76.9851 | 60.6744 | 48.9450 | 1813 | 542 | 2393 | 1551 | 1213 | 78.2076 | |
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 16.5303 | 0.0000 | 0.0000 | 202 | 1020 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | HG002complexvar | homalt | 45.0525 | 29.6785 | 93.4732 | 26.9165 | 360 | 853 | 401 | 28 | 27 | 96.4286 | |
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | * | 20.6071 | 16.5147 | 27.3957 | 31.7261 | 1449 | 7325 | 1478 | 3917 | 3324 | 84.8609 | |
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | het | 36.3374 | 54.3269 | 27.2981 | 31.6711 | 113 | 95 | 1470 | 3915 | 3322 | 84.8531 | |
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 15.5829 | 0.0000 | 0.0000 | 1330 | 7205 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | HG002compoundhet | homalt | 31.1688 | 19.3548 | 80.0000 | 52.3810 | 6 | 25 | 8 | 2 | 2 | 100.0000 | |
| gduggal-snapvard | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | func_cds | * | 62.1299 | 60.4651 | 63.8889 | 40.0000 | 26 | 17 | 23 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | het | 69.8061 | 87.5000 | 58.0645 | 43.6364 | 21 | 3 | 18 | 13 | 12 | 92.3077 | |
| gduggal-snapvard | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | func_cds | homalt | 50.0000 | 33.3333 | 100.0000 | 0.0000 | 5 | 10 | 5 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.7429 | 20.8134 | 37.3970 | 59.0695 | 174 | 662 | 227 | 380 | 217 | 57.1053 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 41.9959 | 48.5830 | 36.9818 | 58.8396 | 120 | 127 | 223 | 380 | 217 | 57.1053 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 9.6226 | 0.0000 | 0.0000 | 51 | 479 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 9.6774 | 5.0847 | 100.0000 | 77.7778 | 3 | 56 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 44.1015 | 42.1796 | 46.2069 | 48.7496 | 2241 | 3072 | 3551 | 4134 | 3627 | 87.7358 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 55.8285 | 72.0960 | 45.5506 | 48.7100 | 1111 | 430 | 3450 | 4124 | 3618 | 87.7304 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 34.5303 | 0.0000 | 0.0000 | 1077 | 2042 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 14.9034 | 8.1164 | 90.9910 | 51.3158 | 53 | 600 | 101 | 10 | 9 | 90.0000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 41.1509 | 37.5633 | 45.4962 | 49.7904 | 2374 | 3946 | 3379 | 4048 | 3339 | 82.4852 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 53.1638 | 65.0431 | 44.9536 | 49.5979 | 1282 | 689 | 3296 | 4036 | 3328 | 82.4579 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 29.3333 | 0.0000 | 0.0000 | 1034 | 2491 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 13.0281 | 7.0388 | 87.3684 | 61.2245 | 58 | 766 | 83 | 12 | 11 | 91.6667 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 43.9926 | 38.2022 | 51.8519 | 68.8462 | 68 | 110 | 84 | 78 | 56 | 71.7949 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 58.8919 | 70.3704 | 50.6329 | 68.7129 | 57 | 24 | 80 | 78 | 56 | 71.7949 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 13.1148 | 0.0000 | 0.0000 | 8 | 53 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 15.3846 | 8.3333 | 100.0000 | 73.3333 | 3 | 33 | 4 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||