PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37951-38000 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 83.8608 | 0.0000 | 0.0000 | 265 | 51 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.9582 | 83.4711 | 99.9208 | 44.6727 | 808 | 160 | 10092 | 8 | 8 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.0000 | 100.0000 | 60.0000 | 99.9892 | 1 | 0 | 6 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 60.0000 | 99.9881 | 0 | 0 | 6 | 4 | 2 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 69.6175 | 73.0888 | 66.4609 | 58.6501 | 2849 | 1049 | 4092 | 2065 | 1377 | 66.6828 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 74.2485 | 93.1298 | 61.7328 | 60.2144 | 1586 | 117 | 3299 | 2045 | 1364 | 66.6993 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 55.8407 | 0.0000 | 0.0000 | 631 | 499 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 73.7913 | 59.3427 | 97.5400 | 44.2387 | 632 | 433 | 793 | 20 | 13 | 65.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 32.7668 | 34.5725 | 31.1404 | 85.7143 | 93 | 176 | 71 | 157 | 40 | 25.4777 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 42.2961 | 66.6667 | 30.9735 | 85.3532 | 34 | 17 | 70 | 156 | 39 | 25.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 27.1889 | 0.0000 | 0.0000 | 59 | 158 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 96.2264 | 0 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 78.1683 | 81.1429 | 75.4042 | 51.8889 | 852 | 198 | 1306 | 426 | 326 | 76.5258 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.5518 | 94.6809 | 70.0921 | 54.5132 | 445 | 25 | 989 | 422 | 322 | 76.3033 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 70.6070 | 0.0000 | 0.0000 | 221 | 92 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 81.6959 | 69.6629 | 98.7539 | 35.5422 | 186 | 81 | 317 | 4 | 4 | 100.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 44.5230 | 36.0000 | 58.3333 | 84.0000 | 9 | 16 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 73.6842 | 100.0000 | 58.3333 | 83.5616 | 2 | 0 | 7 | 5 | 4 | 80.0000 | |
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 30.4348 | 0.0000 | 0.0000 | 7 | 16 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | * | 90.6741 | 94.8435 | 86.8559 | 87.7132 | 515 | 28 | 826 | 125 | 46 | 36.8000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | het | 88.7467 | 97.8528 | 81.1912 | 89.9796 | 319 | 7 | 518 | 120 | 44 | 36.6667 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m0_e0 | homalt | 95.2577 | 92.3077 | 98.4026 | 77.2032 | 192 | 16 | 308 | 5 | 2 | 40.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | * | 90.7660 | 93.5026 | 88.1850 | 85.4828 | 1252 | 87 | 1754 | 235 | 108 | 45.9574 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | het | 89.7380 | 98.4556 | 82.4387 | 88.3144 | 765 | 12 | 1075 | 229 | 105 | 45.8515 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 40.9091 | 0.0000 | 0.0000 | 18 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m1_e0 | homalt | 94.6381 | 90.5405 | 99.1241 | 73.0527 | 469 | 49 | 679 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | * | 90.7740 | 93.4211 | 88.2728 | 86.1304 | 1278 | 90 | 1799 | 239 | 111 | 46.4435 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | het | 89.8150 | 98.4868 | 82.5468 | 88.8499 | 781 | 12 | 1102 | 233 | 108 | 46.3519 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 40.9091 | 0.0000 | 0.0000 | 18 | 26 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e0 | homalt | 94.4658 | 90.2072 | 99.1465 | 74.1639 | 479 | 52 | 697 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | * | 90.6674 | 93.3333 | 88.1496 | 86.2733 | 1302 | 93 | 1815 | 244 | 114 | 46.7213 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | het | 89.6492 | 98.3951 | 82.3311 | 88.9834 | 797 | 13 | 1109 | 238 | 111 | 46.6387 | |
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 40.0000 | 0.0000 | 0.0000 | 18 | 27 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l100_m2_e1 | homalt | 94.4587 | 90.1852 | 99.1573 | 74.3238 | 487 | 53 | 706 | 6 | 3 | 50.0000 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | * | 89.9579 | 95.1613 | 85.2941 | 90.0943 | 295 | 15 | 493 | 85 | 27 | 31.7647 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | het | 87.9923 | 98.4375 | 79.5511 | 91.6753 | 189 | 3 | 319 | 82 | 26 | 31.7073 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 2 | 2 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m0_e0 | homalt | 94.6345 | 91.2281 | 98.3051 | 82.6130 | 104 | 10 | 174 | 3 | 1 | 33.3333 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | * | 90.5689 | 94.8193 | 86.6832 | 88.0250 | 787 | 43 | 1048 | 161 | 65 | 40.3727 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | het | 88.6113 | 98.7654 | 80.3504 | 90.3081 | 480 | 6 | 642 | 157 | 63 | 40.1274 | |
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 41.1765 | 0.0000 | 0.0000 | 7 | 10 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I1_5 | map_l125_m1_e0 | homalt | 95.2448 | 91.7431 | 99.0244 | 77.8618 | 300 | 27 | 406 | 4 | 2 | 50.0000 | |