PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37701-37750 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | homalt | 98.8809 | 98.0895 | 99.6851 | 64.3445 | 11398 | 222 | 11398 | 36 | 21 | 58.3333 | |
| ghariani-varprowl | SNP | * | map_l100_m1_e0 | * | 98.3728 | 99.0277 | 97.7266 | 70.1377 | 71699 | 704 | 71702 | 1668 | 318 | 19.0647 | |
| ghariani-varprowl | SNP | * | map_l100_m1_e0 | het | 97.8610 | 99.1424 | 96.6122 | 73.4449 | 44970 | 389 | 44973 | 1577 | 254 | 16.1065 | |
| ghariani-varprowl | SNP | * | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 41 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m1_e0 | homalt | 99.3219 | 98.9853 | 99.6607 | 61.9023 | 26729 | 274 | 26729 | 91 | 64 | 70.3297 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | * | 98.3520 | 99.0401 | 97.6734 | 71.9819 | 73254 | 710 | 73257 | 1745 | 322 | 18.4527 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | het | 97.8332 | 99.1530 | 96.5480 | 75.0125 | 46006 | 393 | 46009 | 1645 | 255 | 15.5015 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m2_e0 | homalt | 99.3166 | 99.0008 | 99.6343 | 64.4739 | 27248 | 275 | 27248 | 100 | 67 | 67.0000 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | * | 98.3564 | 99.0460 | 97.6764 | 72.0101 | 74024 | 713 | 74027 | 1761 | 324 | 18.3986 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | het | 97.8415 | 99.1599 | 96.5577 | 75.0527 | 46504 | 394 | 46507 | 1658 | 256 | 15.4403 | |
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m2_e1 | homalt | 99.3161 | 99.0071 | 99.6271 | 64.4501 | 27520 | 276 | 27520 | 103 | 68 | 66.0194 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | * | 97.0458 | 98.1171 | 95.9976 | 79.8507 | 19020 | 365 | 19020 | 793 | 172 | 21.6898 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | het | 96.3272 | 98.5786 | 94.1762 | 82.3918 | 12484 | 180 | 12484 | 772 | 162 | 20.9845 | |
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l125_m0_e0 | homalt | 98.5153 | 97.3778 | 99.6797 | 71.5507 | 6536 | 176 | 6536 | 21 | 10 | 47.6190 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | * | 97.9382 | 98.7204 | 97.1684 | 75.3206 | 44747 | 580 | 44747 | 1304 | 273 | 20.9356 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | het | 97.3202 | 98.9398 | 95.7528 | 78.2919 | 28091 | 301 | 28091 | 1246 | 234 | 18.7801 | |
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l125_m1_e0 | homalt | 99.0868 | 98.5271 | 99.6530 | 67.5166 | 16656 | 249 | 16656 | 58 | 39 | 67.2414 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | * | 97.9545 | 98.7522 | 97.1696 | 76.9826 | 46140 | 583 | 46140 | 1344 | 275 | 20.4613 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | het | 97.3365 | 98.9699 | 95.7561 | 79.6531 | 29016 | 302 | 29016 | 1286 | 236 | 18.3515 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l125_m2_e0 | homalt | 99.1058 | 98.5554 | 99.6624 | 70.0500 | 17124 | 251 | 17124 | 58 | 39 | 67.2414 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | * | 97.9668 | 98.7606 | 97.1856 | 77.0392 | 46617 | 585 | 46617 | 1350 | 276 | 20.4444 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | het | 97.3535 | 98.9777 | 95.7818 | 79.7151 | 29337 | 303 | 29337 | 1292 | 237 | 18.3437 | |
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l125_m2_e1 | homalt | 99.1110 | 98.5626 | 99.6655 | 70.0625 | 17280 | 252 | 17280 | 58 | 39 | 67.2414 | |
| ghariani-varprowl | SNP | * | map_l150_m0_e0 | * | 96.3674 | 97.6729 | 95.0963 | 84.3053 | 11752 | 280 | 11752 | 606 | 137 | 22.6073 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.1429 | 0.0000 | 0.0000 | 2 | 173 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 72.0930 | 68.8889 | 75.6098 | 76.1628 | 31 | 14 | 31 | 10 | 10 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 97.7612 | 0 | 26 | 0 | 3 | 3 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 98.3051 | 0 | 3 | 0 | 2 | 2 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 23 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 62.5000 | 54.0541 | 74.0741 | 77.3109 | 20 | 17 | 20 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0000 | 87.5000 | 73.6842 | 79.3478 | 14 | 2 | 14 | 5 | 5 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 13 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 75.0000 | 75.0000 | 75.0000 | 70.3704 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 80.0000 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||