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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37651-37700 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 83.8511 | 96.7311 | 73.9980 | 86.2278 | 6658 | 225 | 6739 | 2368 | 15 | 0.6334 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 95.3583 | 99.6679 | 91.4059 | 82.1531 | 3902 | 13 | 3914 | 368 | 228 | 61.9565 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.5713 | 98.5668 | 83.7756 | 81.6259 | 45047 | 655 | 45212 | 8756 | 515 | 5.8817 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.0232 | 98.0670 | 78.2151 | 83.4802 | 28157 | 555 | 28299 | 7882 | 82 | 1.0404 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.2427 | 99.4993 | 95.0863 | 76.1894 | 16890 | 85 | 16913 | 874 | 433 | 49.5423 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 90.8942 | 97.5031 | 85.1244 | 74.2945 | 9450 | 242 | 9545 | 1668 | 246 | 14.7482 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 88.8712 | 96.2797 | 82.5214 | 76.5304 | 6004 | 232 | 6081 | 1288 | 13 | 1.0093 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 94.6830 | 99.7395 | 90.1145 | 68.5511 | 3446 | 9 | 3464 | 380 | 233 | 61.3158 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 78.1609 | 80.9524 | 75.5556 | 97.2477 | 34 | 8 | 34 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.9655 | 74.0741 | 64.5161 | 97.5180 | 20 | 7 | 20 | 11 | 2 | 18.1818 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 96.5517 | 93.3333 | 100.0000 | 96.3731 | 14 | 1 | 14 | 0 | 0 | ||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4684 | 99.6391 | 97.3249 | 58.7610 | 17115 | 62 | 17136 | 471 | 62 | 13.1635 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.2430 | 99.5309 | 96.9881 | 59.7341 | 11032 | 52 | 11045 | 343 | 3 | 0.8746 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.9200 | 99.9179 | 97.9418 | 56.8515 | 6083 | 5 | 6091 | 128 | 59 | 46.0938 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.5798 | 99.2191 | 94.0773 | 54.5022 | 18041 | 142 | 18092 | 1139 | 144 | 12.6427 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.5503 | 98.9154 | 92.4066 | 58.6255 | 11309 | 124 | 11354 | 933 | 13 | 1.3934 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.4008 | 99.8073 | 97.0334 | 44.7618 | 6732 | 13 | 6738 | 206 | 131 | 63.5922 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 76.2728 | 88.8112 | 66.8367 | 94.9485 | 127 | 16 | 131 | 65 | 9 | 13.8462 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 75.2746 | 87.2549 | 66.1871 | 95.4411 | 89 | 13 | 92 | 47 | 3 | 6.3830 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 78.7251 | 92.6829 | 68.4211 | 93.1408 | 38 | 3 | 39 | 18 | 6 | 33.3333 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 97.9537 | 99.3610 | 96.5858 | 46.1375 | 7308 | 47 | 7327 | 259 | 42 | 16.2162 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4281 | 99.0035 | 95.9022 | 49.9948 | 4570 | 46 | 4587 | 196 | 1 | 0.5102 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.8634 | 100.0000 | 97.7524 | 37.9730 | 2738 | 0 | 2740 | 63 | 41 | 65.0794 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.7143 | 100.0000 | 75.0000 | 97.3684 | 9 | 0 | 9 | 3 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 93.3333 | 100.0000 | 87.5000 | 97.8723 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.0000 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | * | 97.6658 | 98.4806 | 96.8644 | 74.2691 | 32342 | 499 | 32344 | 1047 | 227 | 21.6810 | |
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | het | 97.0530 | 98.7692 | 95.3955 | 77.5266 | 20944 | 261 | 20946 | 1011 | 206 | 20.3759 | |
| ghariani-varprowl | SNP | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||