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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
37051-37100 / 86044 show all
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
0.0000
3.0303
0.0000
0.0000
132000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
88.2468
79.8834
98.5663
50.9666
2746927543
75.0000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
24.2608
21.2264
28.3074
52.9088
585217158214741470
99.7286
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
41.3724
88.2160
27.0230
51.3251
5397254114611457
99.7262
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.2342
0.0000
0.0000
41704000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
17.0622
9.6110
75.9259
78.6561
42395411313
100.0000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
50.0000
50.0000
50.0000
90.4762
11111
100.0000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
89.4737
10111
100.0000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
01000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
35.3630
32.4556
38.8425
53.3428
44749311447070386992
99.3464
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
51.3899
95.4252
35.1633
52.7695
3692177371568506821
99.5766
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
0.0000
0.3656
0.0000
0.0000
267086000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
40.3388
26.9615
80.0636
58.9286
7562048755188171
90.9574
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
37.9377
35.2193
41.1108
54.0150
39037179390155885544
99.2126
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
53.5870
96.7318
37.0581
53.6813
3167107318754135386
99.5012
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
0.0000
0.4046
0.0000
0.0000
225416000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
43.8171
30.1266
80.3150
57.0116
7141656714175158
90.2857
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
39.0121
35.9892
42.5893
55.2279
53219464531671667112
99.2464
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
54.4494
95.7490
38.0411
54.7898
4257189428069716935
99.4836
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
0.3624
0.0000
0.0000
267148000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
47.1992
32.7962
84.1592
58.8707
103821271036195177
90.7692
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
42.9887
39.8223
46.7021
60.4305
703710634703180247936
98.9033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
58.4037
95.8604
41.9946
60.0631
5604242563477827720
99.2033
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
0.3971
0.0000
0.0000
328027000
ghariani-varprowlINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
51.7959
37.2013
85.2349
63.2016
140123651397242216
89.2562
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
38.9448
36.3079
41.9946
48.7568
34346024343647464690
98.8201
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
53.4542
96.4142
36.9777
47.8842
263598265545254487
99.1602
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
0.3982
0.0000
0.0000
194753000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
52.8148
39.9386
77.9441
54.2466
7801173781221203
91.8552
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
10.6794
9.1448
12.8329
47.1191
1081073106720717
99.5833
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
20.7663
68.9189
12.2249
46.1133
10246100718715
99.5822
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
0872000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
7.1006
3.7267
75.0000
81.8182
6155622
100.0000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_gt200*
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
81.0304
79.3233
82.8125
82.8188
211552124439
88.6364
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
87.8646
98.7097
79.1667
84.0000
15321524037
92.5000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
0.0000
0.0000
037000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
85.3778
78.3784
93.7500
77.9310
58166042
50.0000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
69.5652
66.6667
72.7273
99.4295
381940159
60.0000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
77.0340
78.5714
75.5556
99.4804
33934116
54.5455
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
09000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
69.7674
83.3333
60.0000
98.9806
51643
75.0000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
56.6451
52.8614
61.0122
54.6408
19491738195312481228
98.3974
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
72.0736
97.5227
57.1579
53.3629
161441162512181207
99.0969
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
0.5922
0.0000
0.0000
71175000
ghariani-varprowlINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
54.3046
38.5882
91.6201
62.7471
3285223283021
70.0000