PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36801-36850 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 53.8527 | 45.9807 | 64.9770 | 74.1667 | 143 | 168 | 141 | 76 | 67 | 88.1579 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 44.8723 | 35.0206 | 62.4365 | 72.5902 | 2214 | 4108 | 2214 | 1332 | 1288 | 96.6967 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 71.3996 | 88.8382 | 59.6839 | 72.7955 | 1751 | 220 | 1775 | 1199 | 1169 | 97.4979 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.6523 | 0.0000 | 0.0000 | 23 | 3503 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 62.9334 | 53.3333 | 76.7483 | 71.4713 | 440 | 385 | 439 | 133 | 119 | 89.4737 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 33.4992 | 22.3466 | 66.8742 | 80.9806 | 539 | 1873 | 537 | 266 | 233 | 87.5940 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.6206 | 85.4508 | 69.4444 | 82.3834 | 417 | 71 | 425 | 187 | 171 | 91.4439 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.5647 | 0.0000 | 0.0000 | 10 | 1761 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 65.1163 | 73.2026 | 58.6387 | 74.4652 | 112 | 41 | 112 | 79 | 62 | 78.4810 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 1.0870 | 100.0000 | 1 | 91 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.1111 | 100.0000 | 1 | 8 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 83 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 63.3512 | 58.0645 | 69.6970 | 83.6836 | 90 | 65 | 92 | 40 | 39 | 97.5000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 74.0111 | 93.5484 | 61.2245 | 84.4444 | 58 | 4 | 60 | 38 | 37 | 97.3684 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 2.2727 | 0.0000 | 0.0000 | 1 | 43 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 75.6674 | 63.2653 | 94.1176 | 81.0056 | 31 | 18 | 32 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.3936 | 42.2407 | 65.6103 | 66.2441 | 558 | 763 | 559 | 293 | 288 | 98.2935 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 73.6289 | 89.6552 | 62.4633 | 66.7479 | 416 | 48 | 426 | 256 | 253 | 98.8281 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 1.5601 | 0.0000 | 0.0000 | 10 | 631 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 68.6210 | 61.1111 | 78.2353 | 64.0592 | 132 | 84 | 133 | 37 | 35 | 94.5946 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.3103 | 11.2903 | 66.6667 | 90.9366 | 21 | 165 | 20 | 10 | 9 | 90.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.5714 | 60.0000 | 80.0000 | 90.8425 | 21 | 14 | 20 | 5 | 4 | 80.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 151 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 91.3793 | 0 | 0 | 0 | 5 | 5 | 100.0000 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 47.0793 | 34.9282 | 72.1951 | 63.7809 | 146 | 272 | 148 | 57 | 56 | 98.2456 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 78.8127 | 90.1639 | 70.0000 | 64.4444 | 110 | 12 | 112 | 48 | 48 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 237 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 69.2308 | 61.0169 | 80.0000 | 61.2069 | 36 | 23 | 36 | 9 | 8 | 88.8889 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 100.0000 | 0 | 13 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | map_l100_m0_e0 | * | 68.8525 | 63.6364 | 75.0000 | 92.5134 | 21 | 12 | 21 | 7 | 5 | 71.4286 | |