PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36701-36750 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m0_e0 | homalt | 94.1176 | 88.8889 | 100.0000 | 96.8127 | 8 | 1 | 8 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | * | 91.2442 | 93.3962 | 89.1892 | 97.0217 | 99 | 7 | 99 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | het | 90.7692 | 98.3333 | 84.2857 | 97.7827 | 59 | 1 | 59 | 11 | 3 | 27.2727 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.1176 | 90.9091 | 97.5610 | 92.8070 | 40 | 4 | 40 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | * | 90.9871 | 93.8053 | 88.3333 | 97.2515 | 106 | 7 | 106 | 14 | 4 | 28.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | het | 90.2778 | 98.4848 | 83.3333 | 97.8793 | 65 | 1 | 65 | 13 | 3 | 23.0769 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.2529 | 91.1111 | 97.6190 | 93.8953 | 41 | 4 | 41 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | * | 91.0638 | 93.8596 | 88.4298 | 97.3206 | 107 | 7 | 107 | 14 | 4 | 28.5714 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | het | 90.2778 | 98.4848 | 83.3333 | 97.9517 | 65 | 1 | 65 | 13 | 3 | 23.0769 | |
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.3820 | 91.3043 | 97.6744 | 93.9266 | 42 | 4 | 42 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | map_siren | * | 92.4494 | 93.3444 | 91.5714 | 83.4764 | 2805 | 200 | 2803 | 258 | 121 | 46.8992 | |
| ghariani-varprowl | INDEL | I1_5 | map_siren | het | 93.1801 | 98.4533 | 88.4430 | 87.0613 | 1655 | 26 | 1653 | 216 | 106 | 49.0741 | |
| ghariani-varprowl | INDEL | I1_5 | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 112 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | map_siren | homalt | 95.6739 | 94.8845 | 96.4765 | 70.7843 | 1150 | 62 | 1150 | 42 | 15 | 35.7143 | |
| ghariani-varprowl | INDEL | I1_5 | segdup | * | 91.1523 | 91.5958 | 90.7129 | 95.2994 | 970 | 89 | 967 | 99 | 67 | 67.6768 | |
| ghariani-varprowl | INDEL | I1_5 | segdup | het | 91.7878 | 98.1413 | 86.2069 | 96.5587 | 528 | 10 | 525 | 84 | 56 | 66.6667 | |
| ghariani-varprowl | INDEL | I1_5 | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 48 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | segdup | homalt | 95.0538 | 93.4461 | 96.7177 | 90.8251 | 442 | 31 | 442 | 15 | 11 | 73.3333 | |
| ghariani-varprowl | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | * | 83.7209 | 81.8182 | 85.7143 | 60.3774 | 18 | 4 | 18 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | het | 84.2105 | 100.0000 | 72.7273 | 57.6923 | 8 | 0 | 8 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | tech_badpromoters | homalt | 86.9565 | 76.9231 | 100.0000 | 62.9630 | 10 | 3 | 10 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | * | * | 61.1674 | 55.3640 | 68.3299 | 52.2203 | 13743 | 11080 | 13763 | 6379 | 6287 | 98.5578 | |
| ghariani-varprowl | INDEL | I6_15 | * | het | 73.9358 | 94.0397 | 60.9136 | 54.3281 | 9435 | 598 | 9494 | 6092 | 6035 | 99.0643 | |
| ghariani-varprowl | INDEL | I6_15 | * | hetalt | 0.0000 | 0.5029 | 0.0000 | 0.0000 | 43 | 8508 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | * | homalt | 79.0493 | 68.3603 | 93.7006 | 43.2628 | 4265 | 1974 | 4269 | 287 | 252 | 87.8049 | |
| ghariani-varprowl | INDEL | I6_15 | HG002complexvar | * | 71.5536 | 66.2145 | 77.8293 | 58.1077 | 3173 | 1619 | 3191 | 909 | 871 | 95.8196 | |
| ghariani-varprowl | INDEL | I6_15 | HG002complexvar | het | 82.0261 | 92.4841 | 73.6930 | 59.9920 | 2178 | 177 | 2213 | 790 | 772 | 97.7215 | |
| ghariani-varprowl | INDEL | I6_15 | HG002complexvar | hetalt | 0.0000 | 1.7989 | 0.0000 | 0.0000 | 22 | 1201 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | HG002complexvar | homalt | 84.4108 | 80.1483 | 89.1522 | 51.9071 | 973 | 241 | 978 | 119 | 99 | 83.1933 | |
| ghariani-varprowl | INDEL | I6_15 | HG002compoundhet | * | 2.8447 | 2.1650 | 4.1467 | 43.0029 | 190 | 8586 | 190 | 4392 | 4347 | 98.9754 | |
| ghariani-varprowl | INDEL | I6_15 | HG002compoundhet | het | 7.4887 | 61.5385 | 3.9869 | 41.9228 | 128 | 80 | 171 | 4118 | 4099 | 99.5386 | |
| ghariani-varprowl | INDEL | I6_15 | HG002compoundhet | hetalt | 0.0000 | 0.5037 | 0.0000 | 0.0000 | 43 | 8494 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | HG002compoundhet | homalt | 11.7284 | 61.2903 | 6.4846 | 55.1988 | 19 | 12 | 19 | 274 | 248 | 90.5109 | |
| ghariani-varprowl | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I6_15 | func_cds | * | 83.7209 | 83.7209 | 83.7209 | 37.6812 | 36 | 7 | 36 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | het | 87.2727 | 100.0000 | 77.4194 | 39.2157 | 24 | 0 | 24 | 7 | 7 | 100.0000 | |
| ghariani-varprowl | INDEL | I6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I6_15 | func_cds | homalt | 88.8889 | 80.0000 | 100.0000 | 33.3333 | 12 | 3 | 12 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 36.8301 | 26.7943 | 58.8859 | 77.4791 | 224 | 612 | 222 | 155 | 153 | 98.7097 | |