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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36551-36600 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 97.6620 | 99.4893 | 95.9007 | 73.2635 | 11493 | 59 | 11510 | 492 | 263 | 53.4553 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 89.5968 | 97.3744 | 82.9698 | 74.5108 | 4710 | 127 | 4755 | 976 | 140 | 14.3443 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.4326 | 96.2516 | 80.0940 | 76.2162 | 3030 | 118 | 3066 | 762 | 11 | 1.4436 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.8322 | 99.5261 | 88.7546 | 70.2144 | 1680 | 8 | 1689 | 214 | 129 | 60.2804 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.0000 | 75.0000 | 75.0000 | 97.8349 | 12 | 4 | 12 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 60.0000 | 60.0000 | 98.1982 | 6 | 4 | 6 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8700 | 99.7128 | 98.0414 | 48.3490 | 6250 | 18 | 6257 | 125 | 13 | 10.4000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.7332 | 99.6556 | 97.8277 | 50.1744 | 4051 | 14 | 4053 | 90 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1675 | 99.9091 | 98.4368 | 44.5929 | 2199 | 2 | 2204 | 35 | 13 | 37.1429 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 96.7473 | 99.3571 | 94.2711 | 57.1736 | 10663 | 69 | 10696 | 650 | 69 | 10.6154 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.6807 | 99.1251 | 92.4676 | 62.1593 | 6685 | 59 | 6715 | 547 | 8 | 1.4625 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.6127 | 99.7743 | 97.4780 | 44.0701 | 3978 | 9 | 3981 | 103 | 61 | 59.2233 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.6740 | 88.1188 | 64.7887 | 95.5942 | 89 | 12 | 92 | 50 | 7 | 14.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 71.3785 | 86.3636 | 60.8247 | 96.1886 | 57 | 9 | 59 | 38 | 3 | 7.8947 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.3873 | 91.4286 | 73.3333 | 93.3628 | 32 | 3 | 33 | 12 | 4 | 33.3333 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6463 | 99.5904 | 97.7199 | 44.7612 | 3890 | 16 | 3900 | 91 | 9 | 9.8901 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.2105 | 99.3947 | 97.0542 | 49.5042 | 2463 | 15 | 2471 | 75 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.4433 | 100.0000 | 98.8927 | 33.8067 | 1427 | 0 | 1429 | 16 | 9 | 56.2500 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.1176 | 100.0000 | 88.8889 | 97.3684 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.8873 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.8276 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | * | 97.9382 | 98.3970 | 97.4836 | 73.1519 | 21422 | 349 | 21423 | 553 | 140 | 25.3165 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | het | 97.4217 | 98.6269 | 96.2456 | 76.6277 | 13791 | 192 | 13792 | 538 | 130 | 24.1636 | |
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 14 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l100_m0_e0 | homalt | 98.9754 | 98.1605 | 99.8038 | 62.7769 | 7631 | 143 | 7631 | 15 | 10 | 66.6667 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | * | 98.6066 | 98.9944 | 98.2219 | 68.9891 | 47449 | 482 | 47451 | 859 | 183 | 21.3038 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | het | 98.1681 | 99.0582 | 97.2939 | 72.4309 | 29660 | 282 | 29662 | 825 | 157 | 19.0303 | |
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 29 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l100_m1_e0 | homalt | 99.4271 | 99.0479 | 99.8092 | 60.5686 | 17789 | 171 | 17789 | 34 | 26 | 76.4706 | |
| ghariani-varprowl | SNP | ti | map_l100_m2_e0 | * | 98.5956 | 99.0053 | 98.1892 | 70.8668 | 48474 | 487 | 48476 | 894 | 185 | 20.6935 | |