PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36451-36500 / 86044 show all | |||||||||||||||
| ghariani-varprowl | SNP | * | map_l250_m1_e0 | homalt | 98.0400 | 96.4677 | 99.6644 | 87.9687 | 2376 | 87 | 2376 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | * | 95.6186 | 97.4255 | 93.8776 | 91.4090 | 7682 | 203 | 7682 | 501 | 87 | 17.3653 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | het | 94.4212 | 97.9207 | 91.1633 | 92.2470 | 5086 | 108 | 5086 | 493 | 83 | 16.8357 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l250_m2_e0 | homalt | 98.1474 | 96.6493 | 99.6928 | 88.8202 | 2596 | 90 | 2596 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | * | 95.6014 | 97.4208 | 93.8488 | 91.4722 | 7781 | 206 | 7781 | 510 | 89 | 17.4510 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | het | 94.4053 | 97.9293 | 91.1260 | 92.3124 | 5155 | 109 | 5155 | 502 | 85 | 16.9323 | |
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_l250_m2_e1 | homalt | 98.1315 | 96.6152 | 99.6963 | 88.8565 | 2626 | 92 | 2626 | 8 | 4 | 50.0000 | |
| ghariani-varprowl | SNP | * | map_siren | * | 98.7774 | 99.3373 | 98.2237 | 61.6367 | 145259 | 969 | 145263 | 2627 | 430 | 16.3685 | |
| ghariani-varprowl | SNP | * | map_siren | het | 98.3861 | 99.3911 | 97.4013 | 64.9618 | 90437 | 554 | 90440 | 2413 | 303 | 12.5570 | |
| ghariani-varprowl | SNP | * | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 81 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | map_siren | homalt | 99.5027 | 99.3944 | 99.6112 | 54.3239 | 54822 | 334 | 54823 | 214 | 127 | 59.3458 | |
| ghariani-varprowl | SNP | * | segdup | * | 97.8779 | 99.6437 | 96.1737 | 92.2561 | 27967 | 100 | 27975 | 1113 | 70 | 6.2893 | |
| ghariani-varprowl | SNP | * | segdup | het | 96.9575 | 99.5207 | 94.5230 | 93.2841 | 17234 | 83 | 17241 | 999 | 5 | 0.5005 | |
| ghariani-varprowl | SNP | * | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | segdup | homalt | 99.4257 | 99.9069 | 98.9491 | 89.5722 | 10733 | 10 | 10734 | 114 | 65 | 57.0175 | |
| ghariani-varprowl | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | * | tech_badpromoters | * | 96.5732 | 98.7261 | 94.5122 | 54.3175 | 155 | 2 | 155 | 9 | 2 | 22.2222 | |
| ghariani-varprowl | SNP | * | tech_badpromoters | het | 95.0000 | 98.7013 | 91.5663 | 57.6531 | 76 | 1 | 76 | 7 | 1 | 14.2857 | |
| ghariani-varprowl | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 50.3067 | 79 | 1 | 79 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | SNP | ti | * | * | 99.5372 | 99.8784 | 99.1982 | 22.5770 | 2082957 | 2536 | 2083186 | 16837 | 1291 | 7.6676 | |
| ghariani-varprowl | SNP | ti | * | het | 99.3626 | 99.8721 | 98.8582 | 25.2183 | 1280237 | 1639 | 1280417 | 14789 | 277 | 1.8730 | |
| ghariani-varprowl | SNP | ti | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 582 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | * | homalt | 99.8530 | 99.9608 | 99.7455 | 17.9110 | 802720 | 315 | 802769 | 2048 | 1014 | 49.5117 | |
| ghariani-varprowl | SNP | ti | HG002complexvar | * | 99.5322 | 99.7412 | 99.3241 | 19.7678 | 507113 | 1316 | 507283 | 3452 | 789 | 22.8563 | |
| ghariani-varprowl | SNP | ti | HG002complexvar | het | 99.4535 | 99.6801 | 99.2280 | 19.8744 | 313754 | 1007 | 313878 | 2442 | 84 | 3.4398 | |
| ghariani-varprowl | SNP | ti | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 207 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | HG002complexvar | homalt | 99.7133 | 99.9473 | 99.4805 | 19.5938 | 193359 | 102 | 193405 | 1010 | 705 | 69.8020 | |
| ghariani-varprowl | SNP | ti | HG002compoundhet | * | 88.8369 | 93.7235 | 84.4347 | 48.3203 | 16381 | 1097 | 16496 | 3041 | 899 | 29.5626 | |
| ghariani-varprowl | SNP | ti | HG002compoundhet | het | 88.1728 | 94.6870 | 82.4973 | 54.5571 | 9000 | 505 | 9111 | 1933 | 19 | 0.9829 | |
| ghariani-varprowl | SNP | ti | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 579 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | HG002compoundhet | homalt | 92.9457 | 99.8242 | 86.9540 | 37.0935 | 7381 | 13 | 7385 | 1108 | 880 | 79.4224 | |
| ghariani-varprowl | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | func_cds | * | 99.6201 | 99.8549 | 99.3864 | 28.0976 | 13767 | 20 | 13767 | 85 | 9 | 10.5882 | |
| ghariani-varprowl | SNP | ti | func_cds | het | 99.5080 | 99.8942 | 99.1249 | 31.7349 | 8495 | 9 | 8495 | 75 | 2 | 2.6667 | |
| ghariani-varprowl | SNP | ti | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | func_cds | homalt | 99.8769 | 99.9431 | 99.8107 | 21.2934 | 5272 | 3 | 5272 | 10 | 7 | 70.0000 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.0759 | 98.6453 | 88.1018 | 77.5526 | 3204 | 44 | 3221 | 435 | 34 | 7.8161 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 90.5692 | 98.0237 | 84.1684 | 80.1687 | 1984 | 40 | 1999 | 376 | 4 | 1.0638 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4868 | 99.6732 | 95.3942 | 70.2853 | 1220 | 4 | 1222 | 59 | 30 | 50.8475 | |
| ghariani-varprowl | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||