PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3501-3550 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.0368 | 92.3975 | 99.9745 | 38.5038 | 15435 | 1270 | 15656 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.6574 | 99.7082 | 97.6284 | 65.7023 | 18113 | 53 | 18113 | 440 | 428 | 97.2727 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 97.6279 | 96.5566 | 98.7231 | 49.8328 | 35332 | 1260 | 35256 | 456 | 427 | 93.6404 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.3115 | 96.3071 | 98.3370 | 59.4348 | 15178 | 582 | 15020 | 254 | 229 | 90.1575 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.7068 | 93.6325 | 99.9899 | 31.2313 | 9808 | 667 | 9890 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.9858 | 99.8938 | 98.0942 | 44.9243 | 10346 | 11 | 10346 | 201 | 197 | 98.0100 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 82.1683 | 78.7720 | 85.8708 | 53.3827 | 1655 | 446 | 1568 | 258 | 253 | 98.0620 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.4719 | 85.9184 | 64.1753 | 76.0494 | 421 | 69 | 249 | 139 | 136 | 97.8417 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.8264 | 70.6869 | 100.0000 | 30.6648 | 885 | 367 | 970 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 84.4015 | 97.2145 | 74.5726 | 47.8842 | 349 | 10 | 349 | 119 | 117 | 98.3193 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7590 | 99.5966 | 99.9219 | 57.4394 | 28146 | 114 | 28148 | 22 | 15 | 68.1818 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7041 | 99.4765 | 99.9327 | 57.5361 | 16343 | 86 | 16341 | 11 | 4 | 36.3636 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.6077 | 95.3271 | 100.0000 | 72.7898 | 510 | 25 | 514 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9381 | 99.9734 | 99.9027 | 56.1708 | 11293 | 3 | 11293 | 11 | 11 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.8883 | 79.0323 | 98.9796 | 99.9286 | 98 | 26 | 97 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 82.4324 | 70.1149 | 100.0000 | 99.9146 | 61 | 26 | 60 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8747 | 16 | 0 | 16 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9595 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0655 | 98.4745 | 99.6636 | 56.9081 | 19559 | 303 | 19552 | 66 | 47 | 71.2121 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.8701 | 98.1095 | 99.6426 | 59.5927 | 10898 | 210 | 10873 | 39 | 20 | 51.2821 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.3128 | 96.6816 | 100.0000 | 40.4561 | 2593 | 89 | 2611 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7452 | 99.9341 | 99.5570 | 56.8831 | 6068 | 4 | 6068 | 27 | 27 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1443 | 94.3879 | 97.9673 | 65.1092 | 2506 | 149 | 2458 | 51 | 44 | 86.2745 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.2802 | 92.6653 | 95.9524 | 80.0853 | 897 | 71 | 806 | 34 | 28 | 82.3529 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.6754 | 93.6402 | 99.9140 | 32.5015 | 1119 | 76 | 1162 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.1964 | 99.5935 | 96.8379 | 59.5200 | 490 | 2 | 490 | 16 | 15 | 93.7500 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4334 | 99.0346 | 99.8354 | 46.3028 | 6668 | 65 | 6670 | 11 | 7 | 63.6364 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2442 | 98.7151 | 99.7789 | 49.7012 | 3611 | 47 | 3611 | 8 | 4 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.0153 | 98.0498 | 100.0000 | 28.0159 | 905 | 18 | 907 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9303 | 100.0000 | 99.8608 | 45.9493 | 2152 | 0 | 2152 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.9467 | 93.2432 | 96.7136 | 59.8113 | 207 | 15 | 206 | 7 | 5 | 71.4286 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 89.6217 | 88.0000 | 91.3043 | 82.5095 | 44 | 6 | 42 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 96.2656 | 92.8000 | 100.0000 | 27.7778 | 116 | 9 | 117 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 52.3810 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | * | 97.7226 | 97.3768 | 98.0707 | 83.8643 | 1522 | 41 | 1525 | 30 | 4 | 13.3333 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | het | 97.3501 | 97.0617 | 97.6401 | 84.2716 | 991 | 30 | 993 | 24 | 1 | 4.1667 | |
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 88.7273 | 30 | 3 | 31 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m0_e0 | homalt | 98.6220 | 98.4283 | 98.8166 | 82.4931 | 501 | 8 | 501 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | * | 97.9681 | 97.4066 | 98.5360 | 82.3019 | 3493 | 93 | 3500 | 52 | 13 | 25.0000 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | het | 97.6425 | 97.1812 | 98.1081 | 82.4811 | 2172 | 63 | 2178 | 42 | 8 | 19.0476 | |
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | hetalt | 93.5622 | 87.9032 | 100.0000 | 83.7758 | 109 | 15 | 110 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | * | map_l100_m1_e0 | homalt | 98.9792 | 98.7775 | 99.1817 | 81.8155 | 1212 | 15 | 1212 | 10 | 5 | 50.0000 | |