PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
301-350 / 86044 show all
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9318
99.8637
100.0000
42.6858
21983219800
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
77.7778
20200
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9262
99.9262
45.5021
40623406233
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9282
99.9043
99.9521
44.5722
62626626233
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.7213
60600
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200het
88.8889
80.0000
100.0000
98.3193
82800
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_51to200*
93.3333
87.5000
100.0000
97.8788
1421400
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.7923
99.6445
99.9406
65.1625
16826168211
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
91.6667
10100
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50het
99.7460
99.8094
99.6827
70.4841
314263142106
60.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7622
99.7519
99.7725
68.8442
4825124825117
63.6364
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.8049
99.6537
99.9566
69.9831
11512401151452
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
90.9774
1201200
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.5554
99.5199
99.5910
69.5435
1948594194818032
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.6481
99.5697
99.7266
69.7354
31009134310078534
40.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6890
99.4621
99.9169
79.7698
240413240621
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.4545
20200
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.6224
99.6697
99.5753
80.0565
42241442201810
55.5556
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6468
99.5944
99.6992
79.9741
66302766282011
55.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.0826
98.6945
99.4737
82.8674
378537821
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.1682
99.4444
98.8935
86.9353
716471587
87.5000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.1395
99.1848
99.0942
85.7787
109591094108
80.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2090
98.8739
99.5465
84.4225
439543921
50.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.9423
99.0599
98.8249
87.6792
8438841108
80.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.0344
98.9969
99.0719
86.7371
1283131281129
75.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
90.5333
6907100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.3309
96.7105
97.9592
91.2343
147514432
66.6667
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
98.1787
97.7376
98.6239
91.0177
216521532
66.6667
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7078
99.4172
100.0000
48.8609
853585300
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9684
100.0000
99.9367
49.1803
15800158010
0.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8769
99.7950
99.9589
49.0692
24345243410
0.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7607
99.5225
100.0000
46.7518
14597145900
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
50.0000
10100
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8821
99.9214
99.8429
48.2941
25422254240
0.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.8378
99.7756
99.9001
47.7433
40029400240
0.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000