PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3351-3400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.6480 | 1309 | 2 | 1309 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | * | 99.1204 | 99.1249 | 99.1158 | 68.4908 | 10987 | 97 | 10986 | 98 | 4 | 4.0816 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | het | 98.8033 | 98.8923 | 98.7144 | 71.7057 | 7142 | 80 | 7141 | 93 | 1 | 1.0753 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 64.5833 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | homalt | 99.7265 | 99.5580 | 99.8956 | 59.9142 | 3829 | 17 | 3829 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | * | 99.3984 | 99.4735 | 99.3234 | 65.0677 | 24372 | 129 | 24368 | 166 | 5 | 3.0121 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | het | 99.1452 | 99.3189 | 98.9720 | 68.0652 | 15312 | 105 | 15308 | 159 | 1 | 0.6289 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | hetalt | 96.2963 | 95.1220 | 97.5000 | 65.5172 | 39 | 2 | 39 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m1_e0 | homalt | 99.8450 | 99.7567 | 99.9335 | 58.3702 | 9021 | 22 | 9021 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | * | 99.4052 | 99.4847 | 99.3259 | 66.9200 | 24904 | 129 | 24900 | 169 | 5 | 2.9586 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | het | 99.1552 | 99.3345 | 98.9766 | 69.6214 | 15672 | 105 | 15668 | 162 | 1 | 0.6173 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | hetalt | 96.3855 | 95.2381 | 97.5610 | 68.4615 | 40 | 2 | 40 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e0 | homalt | 99.8479 | 99.7612 | 99.9348 | 60.9327 | 9192 | 22 | 9192 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | * | 99.4052 | 99.4898 | 99.3207 | 66.9624 | 25154 | 129 | 25150 | 172 | 5 | 2.9070 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | het | 99.1544 | 99.3412 | 98.9684 | 69.6842 | 15833 | 105 | 15829 | 165 | 1 | 0.6061 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | hetalt | 96.4706 | 95.3488 | 97.6190 | 68.1818 | 41 | 2 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l100_m2_e1 | homalt | 99.8494 | 99.7635 | 99.9354 | 60.9109 | 9280 | 22 | 9280 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | * | 98.7925 | 98.7181 | 98.8671 | 74.3082 | 6546 | 85 | 6545 | 75 | 3 | 4.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | het | 98.3750 | 98.3640 | 98.3860 | 76.8948 | 4329 | 72 | 4328 | 71 | 1 | 1.4085 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 9 | 0 | 9 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.6165 | 99.4147 | 99.8192 | 66.9456 | 2208 | 13 | 2208 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | * | 99.1952 | 99.2757 | 99.1147 | 70.0226 | 15900 | 116 | 15898 | 142 | 4 | 2.8169 | |
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | het | 98.8615 | 99.0618 | 98.6621 | 72.9114 | 10031 | 95 | 10029 | 136 | 1 | 0.7353 | |
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 67.4419 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m1_e0 | homalt | 99.7865 | 99.6758 | 99.8974 | 63.2172 | 5841 | 19 | 5841 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | * | 99.2122 | 99.2904 | 99.1340 | 71.8789 | 16372 | 117 | 16370 | 143 | 4 | 2.7972 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | het | 98.8912 | 99.0902 | 98.6930 | 74.4522 | 10347 | 95 | 10345 | 137 | 1 | 0.7299 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.2772 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e0 | homalt | 99.7837 | 99.6676 | 99.9000 | 65.8746 | 5997 | 20 | 5997 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | * | 99.2171 | 99.2976 | 99.1368 | 71.9418 | 16540 | 117 | 16538 | 144 | 4 | 2.7778 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | het | 98.8982 | 99.0998 | 98.6974 | 74.5288 | 10458 | 95 | 10456 | 138 | 1 | 0.7246 | |
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | hetalt | 96.5517 | 93.3333 | 100.0000 | 72.5490 | 28 | 2 | 28 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l125_m2_e1 | homalt | 99.7857 | 99.6707 | 99.9010 | 65.8803 | 6054 | 20 | 6054 | 6 | 3 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | * | 98.6080 | 98.4427 | 98.7737 | 78.9854 | 4109 | 65 | 4108 | 51 | 2 | 3.9216 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | het | 98.1142 | 97.9247 | 98.3045 | 80.9258 | 2784 | 59 | 2783 | 48 | 1 | 2.0833 | |
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | homalt | 99.6608 | 99.5482 | 99.7736 | 73.0800 | 1322 | 6 | 1322 | 3 | 1 | 33.3333 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | * | 98.9969 | 99.0469 | 98.9470 | 74.2022 | 10808 | 104 | 10806 | 115 | 3 | 2.6087 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | het | 98.5915 | 98.7763 | 98.4075 | 76.8439 | 6861 | 85 | 6859 | 111 | 1 | 0.9009 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 74.2857 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | homalt | 99.7335 | 99.5692 | 99.8983 | 67.6642 | 3929 | 17 | 3929 | 4 | 2 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | * | 99.0273 | 99.0841 | 98.9706 | 75.8842 | 11251 | 104 | 11249 | 117 | 3 | 2.5641 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | het | 98.6373 | 98.8279 | 98.4474 | 78.1985 | 7167 | 85 | 7165 | 113 | 1 | 0.8850 | |
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | hetalt | 94.7368 | 90.0000 | 100.0000 | 77.2152 | 18 | 2 | 18 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m2_e0 | homalt | 99.7424 | 99.5836 | 99.9017 | 70.2246 | 4066 | 17 | 4066 | 4 | 2 | 50.0000 | |