PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | het | 74.0741 | 62.5000 | 90.9091 | 95.6175 | 10 | 6 | 10 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.2308 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l150_m2_e1 | homalt | 93.3333 | 87.5000 | 100.0000 | 94.8905 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 98.9362 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.3051 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | * | 66.6667 | 57.1429 | 80.0000 | 97.7169 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | het | 57.1429 | 50.0000 | 66.6667 | 97.7273 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m1_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.0588 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | * | 71.4286 | 62.5000 | 83.3333 | 97.5410 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | het | 66.6667 | 60.0000 | 75.0000 | 97.2973 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e0 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.2603 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e1 | * | 71.4286 | 62.5000 | 83.3333 | 97.6654 | 5 | 3 | 5 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e1 | het | 66.6667 | 60.0000 | 75.0000 | 97.4194 | 3 | 2 | 3 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | map_l250_m2_e1 | homalt | 80.0000 | 66.6667 | 100.0000 | 97.4026 | 2 | 1 | 2 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_siren | * | 96.4706 | 94.0984 | 98.9655 | 83.1395 | 287 | 18 | 287 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | het | 95.2727 | 91.6084 | 99.2424 | 84.2670 | 131 | 12 | 131 | 1 | 1 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | map_siren | hetalt | 96.4029 | 93.0556 | 100.0000 | 79.3846 | 67 | 5 | 67 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | map_siren | homalt | 98.3425 | 98.8889 | 97.8022 | 83.6331 | 89 | 1 | 89 | 2 | 2 | 100.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | segdup | * | 99.1404 | 98.8571 | 99.4253 | 92.0693 | 173 | 2 | 173 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | segdup | het | 98.7952 | 98.7952 | 98.7952 | 92.9780 | 82 | 1 | 82 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I6_15 | segdup | hetalt | 98.8764 | 97.7778 | 100.0000 | 89.8148 | 44 | 1 | 44 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 91.8966 | 47 | 0 | 47 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm1 | INDEL | I6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 53.5714 | 13 | 0 | 13 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 53.3333 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 3 | 0 | 3 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | * | * | 99.9496 | 99.9227 | 99.9766 | 18.0950 | 3052257 | 2362 | 3052118 | 715 | 107 | 14.9650 | |
| hfeng-pmm1 | SNP | * | * | het | 99.9238 | 99.8812 | 99.9665 | 18.1036 | 1871361 | 2226 | 1871236 | 628 | 48 | 7.6433 | |
| hfeng-pmm1 | SNP | * | * | hetalt | 99.7131 | 99.7704 | 99.6560 | 48.7962 | 869 | 2 | 869 | 3 | 3 | 100.0000 | |
| hfeng-pmm1 | SNP | * | * | homalt | 99.9908 | 99.9886 | 99.9929 | 18.0449 | 1180027 | 134 | 1180013 | 84 | 56 | 66.6667 | |
| hfeng-pmm1 | SNP | * | HG002complexvar | * | 99.8780 | 99.7704 | 99.9859 | 18.8078 | 752649 | 1732 | 752504 | 106 | 51 | 48.1132 | |
| hfeng-pmm1 | SNP | * | HG002complexvar | het | 99.8138 | 99.6436 | 99.9845 | 18.0286 | 463838 | 1659 | 463708 | 72 | 19 | 26.3889 | |
| hfeng-pmm1 | SNP | * | HG002complexvar | hetalt | 99.6764 | 99.3548 | 100.0000 | 39.1304 | 308 | 2 | 308 | 0 | 0 | ||
| hfeng-pmm1 | SNP | * | HG002complexvar | homalt | 99.9818 | 99.9754 | 99.9882 | 20.0017 | 288503 | 71 | 288488 | 34 | 32 | 94.1176 | |
| hfeng-pmm1 | SNP | * | HG002compoundhet | * | 97.8294 | 95.8214 | 99.9233 | 39.2517 | 24743 | 1079 | 24742 | 19 | 15 | 78.9474 | |
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m1_e0 | * | 97.8166 | 95.7265 | 100.0000 | 88.0342 | 112 | 5 | 112 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m1_e0 | het | 97.6000 | 95.3125 | 100.0000 | 89.3357 | 61 | 3 | 61 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 97.2973 | 94.7368 | 100.0000 | 85.0000 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m1_e0 | homalt | 98.5075 | 97.0588 | 100.0000 | 86.4754 | 33 | 1 | 33 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | * | 97.5610 | 95.2381 | 100.0000 | 88.4837 | 120 | 6 | 120 | 0 | 0 | ||
| hfeng-pmm1 | INDEL | D6_15 | map_l125_m2_e0 | het | 97.1014 | 94.3662 | 100.0000 | 89.5149 | 67 | 4 | 67 | 0 | 0 | ||