PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3251-3300 / 86044 show all
raldana-dualsentieonSNPtvHG002complexvarhetalt
99.5138
99.0323
100.0000
35.3684
307330700
raldana-dualsentieonSNPtvHG002complexvarhomalt
99.9758
99.9632
99.9884
22.8157
950763595070119
81.8182
raldana-dualsentieonSNPtvHG002compoundhet*
96.9959
94.2620
99.8931
47.1699
8411512841095
55.5556
raldana-dualsentieonSNPtvHG002compoundhethet
94.2957
89.3216
99.8564
53.2191
4174499417263
50.0000
raldana-dualsentieonSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.0708
858485800
raldana-dualsentieonSNPtvHG002compoundhethomalt
99.8228
99.7344
99.9113
42.6999
33799338032
66.6667
raldana-dualsentieonSNPtvdecoy*
0.0000
100.0000
00000
raldana-dualsentieonSNPtvdecoyhet
0.0000
100.0000
00000
raldana-dualsentieonSNPtvdecoyhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvdecoyhomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvfunc_cds*
99.8743
99.9771
99.7716
27.8940
437014369100
0.0000
raldana-dualsentieonSNPtvfunc_cdshet
99.7933
99.9624
99.6248
29.8500
265612655100
0.0000
raldana-dualsentieonSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
56.5217
1001000
raldana-dualsentieonSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
24.3003
17040170400
raldana-dualsentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
98.0221
96.4380
99.6592
65.6762
146254146252
40.0000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
97.1576
94.7581
99.6819
66.9239
9405294031
33.3333
raldana-dualsentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6183
99.6183
99.6183
63.0465
522252221
50.0000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3348
99.0173
99.6544
63.3928
27406272273979513
13.6842
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.9932
98.5200
99.4710
64.4487
17308260172999210
10.8696
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
81.5385
1211200
raldana-dualsentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9306
99.8911
99.9703
61.3700
10086111008633
100.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8505
98.2637
99.4444
73.4266
14318253143188015
18.7500
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.2933
97.4269
99.1752
74.7089
889823588987410
13.5135
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
85.1485
1501500
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7785
99.6681
99.8891
70.9180
540518540565
83.3333
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2844
98.6527
99.9242
46.2291
131818131810
0.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.8777
97.8947
99.8807
46.8948
8371883710
0.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
44.9657
481048100
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5619
99.3100
99.8151
62.4675
215915215940
0.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.3123
98.9185
99.7093
62.6392
137215137240
0.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
62.1205
786078600
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6177
99.5139
99.7216
67.7875
14337143340
0.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.3973
99.2341
99.5609
67.8773
907790740
0.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
67.6126
525052500
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
89.4737
82.4242
97.8417
90.5954
1362913631
33.3333
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
86.9955
78.2258
97.9798
90.3131
97279721
50.0000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
raldana-dualsentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
96.2963
95.1220
97.5000
91.1700
3923910
0.0000