PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32501-32550 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | INDEL | D1_5 | map_siren | * | 99.1528 | 99.3483 | 98.9580 | 80.2591 | 3506 | 23 | 3514 | 37 | 6 | 16.2162 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | het | 98.9959 | 99.4291 | 98.5665 | 80.1620 | 2264 | 13 | 2269 | 33 | 2 | 6.0606 | |
| hfeng-pmm2 | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 91.0138 | 78 | 6 | 78 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | map_siren | homalt | 99.6580 | 99.6575 | 99.6584 | 78.7708 | 1164 | 4 | 1167 | 4 | 4 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | * | 99.5010 | 99.3654 | 99.6370 | 94.5866 | 1096 | 7 | 1098 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | het | 99.3497 | 99.2775 | 99.4220 | 94.7071 | 687 | 5 | 688 | 4 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.6780 | 50 | 2 | 51 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.1176 | 359 | 0 | 359 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9940 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9909 | 1 | 0 | 1 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 48.5714 | 18 | 1 | 18 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 58.8235 | 7 | 1 | 7 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 43.7500 | 9 | 0 | 9 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | D6_15 | * | * | 98.0668 | 96.9186 | 99.2426 | 51.7103 | 25288 | 804 | 25288 | 193 | 170 | 88.0829 | |
| hfeng-pmm2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.0722 | 99.3449 | 98.8011 | 64.3152 | 18047 | 119 | 18047 | 219 | 203 | 92.6941 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 98.2164 | 97.1032 | 99.3555 | 50.5488 | 35532 | 1060 | 35455 | 230 | 205 | 89.1304 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.7812 | 96.5482 | 99.0462 | 60.2645 | 15216 | 544 | 15057 | 145 | 123 | 84.8276 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.6612 | 95.4654 | 99.9603 | 33.6622 | 10000 | 475 | 10082 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4122 | 99.6041 | 99.2209 | 44.4011 | 10316 | 41 | 10316 | 81 | 79 | 97.5309 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.4414 | 79.6287 | 92.1694 | 54.6077 | 1673 | 428 | 1589 | 135 | 130 | 96.2963 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.1831 | 83.0612 | 73.8462 | 79.1933 | 407 | 83 | 240 | 85 | 82 | 96.4706 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 85.2596 | 74.3610 | 99.9015 | 32.1524 | 931 | 321 | 1014 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 90.1750 | 93.3148 | 87.2396 | 48.1081 | 335 | 24 | 335 | 49 | 47 | 95.9184 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.7892 | 99.6568 | 99.9219 | 57.6377 | 28163 | 97 | 28165 | 22 | 14 | 63.6364 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7347 | 99.5374 | 99.9328 | 57.9303 | 16353 | 76 | 16352 | 11 | 4 | 36.3636 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.7701 | 97.5701 | 100.0000 | 73.5650 | 522 | 13 | 525 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9159 | 99.9292 | 99.9026 | 55.9613 | 11288 | 8 | 11288 | 11 | 10 | 90.9091 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 84.9320 | 77.4194 | 94.0594 | 99.9207 | 96 | 28 | 95 | 6 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 78.1011 | 67.8161 | 92.0635 | 99.9065 | 59 | 28 | 58 | 5 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8857 | 16 | 0 | 16 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9523 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1492 | 98.5802 | 99.7249 | 57.4159 | 19580 | 282 | 19573 | 54 | 32 | 59.2593 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.9153 | 98.1365 | 99.7066 | 60.6969 | 10901 | 207 | 10875 | 32 | 10 | 31.2500 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.7925 | 97.6137 | 100.0000 | 42.7983 | 2618 | 64 | 2637 | 0 | 0 | ||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7285 | 99.8188 | 99.6383 | 55.6923 | 6061 | 11 | 6061 | 22 | 22 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6238 | 94.6516 | 98.6800 | 66.1797 | 2513 | 142 | 2467 | 33 | 25 | 75.7576 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.9545 | 92.8719 | 97.1326 | 81.0032 | 899 | 69 | 813 | 24 | 17 | 70.8333 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.1639 | 94.5607 | 99.9146 | 34.3978 | 1130 | 65 | 1170 | 1 | 1 | 100.0000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.3740 | 98.3740 | 98.3740 | 59.0341 | 484 | 8 | 484 | 8 | 7 | 87.5000 | |
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||