PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3201-3250 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | tv | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 49.6454 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | tech_badpromoters | het | 98.4615 | 96.9697 | 100.0000 | 48.3871 | 32 | 1 | 32 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 50.6329 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e0 | homalt | 99.6974 | 99.4879 | 99.9077 | 69.7016 | 7577 | 39 | 7577 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | * | 98.9365 | 98.9963 | 98.8768 | 75.5106 | 20515 | 208 | 20511 | 233 | 9 | 3.8627 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | het | 98.4895 | 98.7092 | 98.2707 | 77.9738 | 12847 | 168 | 12843 | 226 | 3 | 1.3274 | |
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.1538 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l150_m2_e1 | homalt | 99.6939 | 99.4800 | 99.9086 | 69.7472 | 7653 | 40 | 7653 | 7 | 6 | 85.7143 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | * | 97.4527 | 97.7372 | 97.1698 | 91.9458 | 1339 | 31 | 1339 | 39 | 1 | 2.5641 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | het | 96.7570 | 97.4304 | 96.0929 | 92.6538 | 910 | 24 | 910 | 37 | 0 | 0.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | ti | map_l250_m0_e0 | homalt | 98.9619 | 98.3945 | 99.5360 | 89.7625 | 429 | 7 | 429 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | * | 98.0939 | 98.3402 | 97.8488 | 87.6784 | 4503 | 76 | 4503 | 99 | 3 | 3.0303 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | het | 97.3715 | 97.9784 | 96.7720 | 88.9838 | 2908 | 60 | 2908 | 97 | 2 | 2.0619 | |
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | homalt | 99.4375 | 99.0044 | 99.8745 | 84.1493 | 1591 | 16 | 1591 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | * | 98.2170 | 98.4425 | 97.9924 | 88.3517 | 4930 | 78 | 4930 | 101 | 3 | 2.9703 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | het | 97.5401 | 98.0947 | 96.9918 | 89.4930 | 3192 | 62 | 3192 | 99 | 2 | 2.0202 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.2609 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | homalt | 99.4834 | 99.0852 | 99.8847 | 85.3537 | 1733 | 16 | 1733 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | * | 98.2211 | 98.4437 | 97.9996 | 88.4416 | 4997 | 79 | 4997 | 102 | 3 | 2.9412 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | het | 97.5433 | 98.0903 | 97.0024 | 89.5913 | 3236 | 63 | 3236 | 100 | 2 | 2.0000 | |
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.1667 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | homalt | 99.4901 | 99.0971 | 99.8862 | 85.3999 | 1756 | 16 | 1756 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | ti | map_siren | * | 99.5625 | 99.5516 | 99.5734 | 52.8084 | 99905 | 450 | 99890 | 428 | 23 | 5.3738 | |
| raldana-dualsentieon | SNP | ti | map_siren | het | 99.3661 | 99.3941 | 99.3382 | 55.1273 | 62004 | 378 | 61995 | 413 | 8 | 1.9371 | |
| raldana-dualsentieon | SNP | ti | map_siren | hetalt | 98.2456 | 98.2456 | 98.2456 | 65.4545 | 56 | 1 | 56 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | map_siren | homalt | 99.8878 | 99.8127 | 99.9630 | 48.3820 | 37845 | 71 | 37839 | 14 | 14 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | segdup | * | 99.6041 | 99.8055 | 99.4035 | 89.2386 | 19499 | 38 | 19497 | 117 | 4 | 3.4188 | |
| raldana-dualsentieon | SNP | ti | segdup | het | 99.4118 | 99.7672 | 99.0589 | 90.1934 | 12002 | 28 | 12000 | 114 | 1 | 0.8772 | |
| raldana-dualsentieon | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | segdup | homalt | 99.9134 | 99.8668 | 99.9600 | 87.2078 | 7495 | 10 | 7495 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| raldana-dualsentieon | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 42.8571 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | ti | tech_badpromoters | het | 97.6744 | 95.4545 | 100.0000 | 44.7368 | 42 | 2 | 42 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| raldana-dualsentieon | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 40.8451 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | * | * | 99.9049 | 99.8971 | 99.9127 | 21.2799 | 968692 | 998 | 968612 | 846 | 44 | 5.2010 | |
| raldana-dualsentieon | SNP | tv | * | het | 99.8532 | 99.8447 | 99.8617 | 22.1748 | 590777 | 919 | 590703 | 818 | 22 | 2.6895 | |
| raldana-dualsentieon | SNP | tv | * | hetalt | 99.7125 | 99.5408 | 99.8848 | 38.3960 | 867 | 4 | 867 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | * | homalt | 99.9865 | 99.9801 | 99.9928 | 19.7814 | 377048 | 75 | 377042 | 27 | 21 | 77.7778 | |
| raldana-dualsentieon | SNP | tv | HG002complexvar | * | 99.8458 | 99.7136 | 99.9784 | 21.7224 | 245447 | 705 | 245362 | 53 | 18 | 33.9623 | |
| raldana-dualsentieon | SNP | tv | HG002complexvar | het | 99.7643 | 99.5575 | 99.9720 | 20.9789 | 150064 | 667 | 149985 | 42 | 9 | 21.4286 | |