PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30851-30900 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | * | map_l250_m2_e1 | homalt | 99.5040 | 99.6321 | 99.3761 | 87.9531 | 2708 | 10 | 2708 | 17 | 6 | 35.2941 | |
| hfeng-pmm2 | SNP | * | map_siren | * | 99.6789 | 99.6758 | 99.6819 | 56.1450 | 145754 | 474 | 145731 | 465 | 62 | 13.3333 | |
| hfeng-pmm2 | SNP | * | map_siren | het | 99.5406 | 99.5406 | 99.5405 | 57.6094 | 90573 | 418 | 90559 | 418 | 33 | 7.8947 | |
| hfeng-pmm2 | SNP | * | map_siren | hetalt | 99.3789 | 98.7654 | 100.0000 | 75.3846 | 80 | 1 | 80 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | map_siren | homalt | 99.9075 | 99.9003 | 99.9148 | 53.4382 | 55101 | 55 | 55092 | 47 | 29 | 61.7021 | |
| hfeng-pmm2 | SNP | * | segdup | * | 99.6762 | 99.8147 | 99.5380 | 90.2632 | 28015 | 52 | 28009 | 130 | 13 | 10.0000 | |
| hfeng-pmm2 | SNP | * | segdup | het | 99.5302 | 99.7344 | 99.3269 | 90.9417 | 17271 | 46 | 17265 | 117 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5862 | 7 | 0 | 7 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | segdup | homalt | 99.9116 | 99.9441 | 99.8791 | 88.8962 | 10737 | 6 | 10737 | 13 | 13 | 100.0000 | |
| hfeng-pmm2 | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | * | tech_badpromoters | * | 98.7261 | 98.7261 | 98.7261 | 47.3154 | 155 | 2 | 155 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | * | tech_badpromoters | het | 98.6842 | 97.4026 | 100.0000 | 44.8529 | 75 | 2 | 75 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| hfeng-pmm2 | SNP | * | tech_badpromoters | homalt | 98.7654 | 100.0000 | 97.5610 | 49.3827 | 80 | 0 | 80 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | * | * | 99.9484 | 99.9340 | 99.9629 | 17.4396 | 2084135 | 1376 | 2084077 | 774 | 72 | 9.3023 | |
| hfeng-pmm2 | SNP | ti | * | het | 99.9215 | 99.8989 | 99.9442 | 17.8405 | 1280595 | 1296 | 1280545 | 715 | 24 | 3.3566 | |
| hfeng-pmm2 | SNP | ti | * | hetalt | 99.8279 | 99.6564 | 100.0000 | 47.9821 | 580 | 2 | 580 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | * | homalt | 99.9915 | 99.9903 | 99.9927 | 16.7561 | 802960 | 78 | 802952 | 59 | 48 | 81.3559 | |
| hfeng-pmm2 | SNP | ti | HG002complexvar | * | 99.8914 | 99.8002 | 99.9829 | 17.3851 | 507420 | 1016 | 507361 | 87 | 38 | 43.6782 | |
| hfeng-pmm2 | SNP | ti | HG002complexvar | het | 99.8373 | 99.6928 | 99.9822 | 16.6591 | 313799 | 967 | 313749 | 56 | 7 | 12.5000 | |
| hfeng-pmm2 | SNP | ti | HG002complexvar | hetalt | 99.5146 | 99.0338 | 100.0000 | 39.5280 | 205 | 2 | 205 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | HG002complexvar | homalt | 99.9798 | 99.9757 | 99.9840 | 18.5051 | 193416 | 47 | 193407 | 31 | 31 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | HG002compoundhet | * | 98.2110 | 96.5843 | 99.8935 | 34.1246 | 16881 | 597 | 16883 | 18 | 7 | 38.8889 | |
| hfeng-pmm2 | SNP | ti | HG002compoundhet | het | 96.7284 | 93.7822 | 99.8656 | 37.2373 | 8914 | 591 | 8916 | 12 | 1 | 8.3333 | |
| hfeng-pmm2 | SNP | ti | HG002compoundhet | hetalt | 99.8270 | 99.6546 | 100.0000 | 22.7577 | 577 | 2 | 577 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | HG002compoundhet | homalt | 99.9324 | 99.9459 | 99.9189 | 30.7750 | 7390 | 4 | 7390 | 6 | 6 | 100.0000 | |
| hfeng-pmm2 | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | func_cds | * | 99.9166 | 99.9710 | 99.8623 | 22.6414 | 13783 | 4 | 13781 | 19 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | func_cds | het | 99.8707 | 99.9647 | 99.7769 | 23.7626 | 8501 | 3 | 8499 | 19 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 52.9412 | 8 | 0 | 8 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | func_cds | homalt | 99.9905 | 99.9810 | 100.0000 | 20.6798 | 5274 | 1 | 5274 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.6498 | 97.8448 | 99.4681 | 65.4748 | 3178 | 70 | 3179 | 17 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.0002 | 96.8379 | 99.1907 | 64.6712 | 1960 | 64 | 1961 | 16 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.7135 | 99.5098 | 99.9180 | 66.6027 | 1218 | 6 | 1218 | 1 | 0 | 0.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3761 | 98.8412 | 99.9168 | 52.9178 | 27635 | 324 | 27634 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.0510 | 98.2298 | 99.8861 | 53.8211 | 17535 | 316 | 17534 | 20 | 1 | 5.0000 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.9091 | 83.3333 | 100.0000 | 90.0000 | 5 | 1 | 5 | 0 | 0 | ||
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9505 | 99.9307 | 99.9703 | 51.1679 | 10095 | 7 | 10095 | 3 | 2 | 66.6667 | |
| hfeng-pmm2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0802 | 98.5775 | 99.5880 | 67.8801 | 30700 | 443 | 30701 | 127 | 3 | 2.3622 | |